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ViRBase all data(txt): All Virus-Host Interactions
ViRBase all data(xlsx): All Virus-Host Interactions
ViRBase API
URL form
http://www.rna-society.org/virbase/api.php?type=keyword&&keyword=**&&fuzzy=ture
http://www.rna-society.org/virbase/api.php?type=category&&ncrnaCategory=**&&InteractorCategory=**
http://www.rna-society.org/virbase/api.php?type=method&&method=**
Specification of Tag Values
Valid Values | Note |
---|---|
keyword | Searching by ncRNA/Interactor symbol |
category | Searching by ncRNA/Interactor category |
method | Searching by validated method |
For "ncrnaCategory/InteractorCategory" tag:
Valid Values |
---|
miRNA |
lncRNA |
mRNA |
protein |
snoRNA |
shRNA |
Valid Values |
---|
ChIP |
PCR |
Reporter assay |
Microarray |
Western blot |
Immunofluorescence |
Luciferase reporter assay |
... |
Note: ViRBase supports fuzzy queries, users are able to obtain more result by streamlining input, eg: just input "Luciferase" instead of "Luciferase reporter assay".
Examples
Searching for interactions which include CXCR4:
http://www.rna-society.org/virbase/api.php?type=keyword&&keyword=CXCR4
Searching for all of the interactions between miRNA and lncRNA
http://www.rna-society.org/virbase/api.php?type=category&&ncrnaCategory=miRNA&&InteractorCategory=lncRNA
Searching for all of the interactions which discovered Luciferase reporter assay
http://www.rna-society.org/virbase/api.php?type=method&&method=Luciferase reporter assay