Basic Information:

  VIRBase ID:  

VHID00331742

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-3p:  MIMAT0003420          COPB2:  NR_023350     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-3p	COPB2
miRBase Accession/Entrez ID	MIMAT0003420	9276
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	beta'-COP//MCPH19

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COPB2	chr3:139105977(-) A-I      intronic chr3:139105991(-) A-I      intronic chr3:139105971(-) A-I      intronic chr3:139104044(-) A-I      intronic chr3:139105195(-) A-I      intronic chr3:139105245(-) A-I      intronic chr3:139105255(-) A-I      intronic chr3:139105838(-) A-I      intronic chr3:139105904(-) A-I      intronic chr3:139105909(-) A-I      intronic chr3:139106047(-) A-I      intronic chr3:139104031(-) A-I      ncRNA chr3:139104008(-) A-I      ncRNA chr3:139103968(-) A-I      ncRNA chr3:139105265(-) A-I      intronic chr3:139105196(-) A-I      intronic chr3:139104084(-) A-I      intronic chr3:139105941(-) A-I      intronic chr3:139105970(-) A-I      intronic chr3:139107642(-) A-I      intronic chr3:139105953(-) A-I      intronic chr3:139094919(-) A-I      intronic chr3:139105253(-) A-I      intronic chr3:139105793(-) A-I      intronic chr3:139106039(-) A-I      intronic chr3:139094977(-) A-I      intronic chr3:139105996(-) A-I      intronic chr3:139106044(-) A-I      intronic chr3:139105312(-) A-I      intronic chr3:139105129(-) A-I      intronic chr3:139105204(-) A-I      intronic chr3:139105211(-) A-I      intronic chr3:139103985(-) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	COPB2	chr3:139105241(-) A-I intron -    21960545   //22327324 chr3:139105204(-) A-I intron -    21960545 chr3:139104031(-) A-G intron -    22484847 chr3:139105117(-) C-A intron -    22484847 chr3:139105118(-) T-A intron -    22484847 chr3:139105121(-) G-C intron -    22484847 chr3:139105129(-) A-G intron -    22484847 chr3:139105204(-) A-G intron -    22484847 chr3:139105241(-) A-G intron -    22484847 chr3:139105261(-) A-G intron -    22484847 chr3:139105265(-) A-G intron -    22484847 chr3:139105996(-) A-G intron -    22484847 chr3:139106039(-) A-G intron -    22484847 chr3:139107579(-) A-G intron -    22484847 chr3:139107632(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COPB2	chr3:139076366-139076367(-) m6A 3'UTR//intron       27773535 chr3:139076445-139076446(-) m6A 3'UTR//intron       24284625//27773535 chr3:139076460-139076461(-) m6A 3'UTR//intron       24284625//27773535 chr3:139076495-139076496(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr3:139076579-139076580(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22575960//22608085 chr3:139076611-139076612(-) m6A 3'UTR//intron       24284625//24981863//28052920//26404942//27773535//22575960//22608085 chr3:139076621-139076622(-) m6A 3'UTR//intron       24284625//24981863//28052920//26404942//27773535//22575960//22608085 chr3:139076675-139076676(-) m6A 3'UTR//exon//intron       24284625//24981863//28052920//26404942//27773535//22575960//22608085 chr3:139076788-139076789(-) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr3:139077098-139077099(-) m6A CDS//exon//intron       24284625 chr3:139077110-139077111(-) m6A CDS//exon//intron       24284625 chr3:139079994-139079995(-) m6A CDS//intron       27773535//22575960 chr3:139080107-139080108(-) m6A CDS//intron       22575960 chr3:139088316-139088317(-) m6A CDS       26404942 chr3:139088341-139088342(-) m6A CDS       26404942 chr3:139090615-139090616(-) m6A CDS       27773535 chr3:139092079-139092080(-) m6A CDS       26404942//27773535 chr3:139092239-139092240(-) m6A CDS       26404942//27773535//22575960 chr3:139092550-139092551(-) m6A CDS       27773535 chr3:139092647-139092648(-) m6A CDS       27773535 chr3:139093095-139093096(-) m6A exon//intron       27773535 chr3:139103867-139103868(-) m6A 5'UTR//exon//intron       - chr3:139103905-139103906(-) m6A 5'UTR//exon//intron       24981863 chr3:139103975-139103976(-) m6A 5'UTR//exon//intron       - chr3:139104073-139104074(-) m6A 5'UTR//intron       24209618 chr3:139104096-139104097(-) m6A 5'UTR//intron       - chr3:139108322-139108323(-) m6A 5'UTR//intron       24284625//24981863 chr3:139108403-139108404(-) m6A 5'UTR//exon//intron       24284625//24981863//26404942//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	COPB2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-3p
Interactor2: COPB2

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg