Detail-Interactions: | |
RAID ID: | RRI00004492 |
---|---|
RNA/Protein Symbol 1: | SNORD96B(U96b) |
RNA/Protein Category 1: | snoRNA |
RNA/Protein Symbol 2: | RNA5-8S4 |
RNA/Protein Category 2: | rRNA |
Validated Method: | Immunoprecipitation, Northern blot, In situ hybridization |
Tissue: | Hela cells |
PMID: | 14602913 |
Detail description: | As for U96, U103, U104 and U106 snoRNAs, they are predicted to direct Gm75 (5.8S RNA), Gm601 (18S rRNA), Cm1320 (28S rRNA) and Um799 (18S rRNA), respectively, through phylogenetically conserved RNA guide duplexes (Table 1). |
The Predicated Binding Sites between and | |||||
By miRanda | Structure | Match Score | Energy Score | Location | Location |
The Predicated Binding Sites between and | ||||
By RIsearch | Structure | Location | Location | Score |
The Predicated Binding Sites of RNA5-8S4 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.