The Detail Information for This Interaction


  • Detail
  • Binding
  • Network
Detail-Interactions:
RAID ID: RRI00004491
RNA/Protein Symbol 1:SNORD96B(U96b)
RNA/Protein Category 1: snoRNA
RNA/Protein Symbol 2: RNA5-8S3
RNA/Protein Category 2: rRNA
Validated Method: Immunoprecipitation, Northern blot, In situ hybridization
Tissue: Hela cells 
PMID: 14602913 
Detail description:

As for U96, U103, U104 and U106 snoRNAs, they are predicted to direct Gm75 (5.8S RNA), Gm601 (18S rRNA), Cm1320 (28S rRNA) and Um799 (18S rRNA), respectively, through phylogenetically conserved RNA guide duplexes (Table 1). 

The Predicated Binding Sites between and
By miRanda Structure Match Score Energy Score Location Location
The Predicated Binding Sites between and
By RIsearch Structure Location Location Score
The Predicated Binding Sites of RNA5-8S3
RBPBD 

					

					

						RsiteDB
						
					

						BindN
						
							 

								
					

					

						BindN+
						
							 

								
					

					

					    RNAbindR
						
                              
	 
								
					

					

					    Pprint
						
                            

								
					



				 
	
            			
	

	
    
	
	  
	 

      

	  
Visualization:
	  
	  

	  Select the center nodes:
	   First Node
	   Second Node
	  Both the Nodes	
 
      
Select the Level of Neighbour:
	   First Neighbour
	   Second Neighbour  
	  

	        
	  

	 
	 
	


 
	 

	  The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
	  the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes. 
	  
The 'First Neighbour' represents the sub-network of direct interacting with the center node, 
	  the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node. 
	  Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
	 


	  

	   
	
	

  





	

		

           			
				
	
                   The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
 
				   The Binding page: representing the predicted binding sites and/or constants.
 
				   The Network page: representing the interaction sub-network of interacting RNA/Protein.