The Detail Information for This Interaction


  • Detail
  • Binding
  • Network
Detail-Interactions:
RAID ID: RRI00003898
RNA/Protein Symbol 1:SNORD88C(HBII-180C)
RNA/Protein Category 1: snoRNA
RNA/Protein Symbol 2: FGFR3 mRNA
RNA/Protein Category 2: mRNA
Validated Method: Immunoprecipitation
Tissue:  
PMID: 22199253 
Detail description:

Functional analyses demonstrated that this region of HBII-180C can influence the alternative splicing of FGFR3 pre-mRNA, supporting a role for some snoRNAs in the regulation of splicing. 

The Predicated Binding Sites between SNORD88C and FGFR3
By miRanda Structure Match Score Energy Score SNORD88C Location FGFR3 Location
The Predicated Binding Sites between SNORD88C and FGFR3
By RIsearch Structure SNORD88C Location FGFR3 Location Score 
Query:    3' CCCAGGACCU-UUGACACCUGGGGGUCU---GAGGGGCCC 5'
          || |:||||  :||   ||||  ||:|       ||||||
Target:   5' GGCUUCUGGUUGACG-AGGACGACCGGCCCGAGACCCGGG 3'
59-94 373-411 -35.03
The Predicated Binding Sites of FGFR3
RBPBD 

					

					

						RsiteDB
						
					

						BindN
						
							 

								
					

					

						BindN+
						
							 

								
					

					

					    RNAbindR
						
                              
	 
								
					

					

					    Pprint
						
                            

								
					



				 
	
            			
	

	
    
	
	  
	 

      

	  
Visualization:
	  
	  

	  Select the center nodes:
	   First Node
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	  Both the Nodes	
 
      
Select the Level of Neighbour:
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	  The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
	  the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes. 
	  
The 'First Neighbour' represents the sub-network of direct interacting with the center node, 
	  the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node. 
	  Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
	 


	  

	   
	
	

  





	

		

           			
				
	
                   The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
 
				   The Binding page: representing the predicted binding sites and/or constants.
 
				   The Network page: representing the interaction sub-network of interacting RNA/Protein.