The Detail Information for This Interaction


  • Detail
  • Binding
  • Network
Detail-Interactions:
RAID ID: RRI00003043
RNA/Protein Symbol 1:MIR218-2(miR-218)
RNA/Protein Category 1: miRNA
RNA/Protein Symbol 2: MMP9 mRNA(MMP-9)
RNA/Protein Category 2: mRNA
Validated Method:
Tissue:  
PMID: 22766851 
Detail description:

Importantly, western blot assays demonstrated that miR-218 can reduce protein levels of LEF1 and MMP-9. 

The Predicated Binding Sites between MIR218-2 and MMP9
By miRanda Structure Match Score Energy Score MIR218-2 Location MMP9 Location
The Predicated Binding Sites between MIR218-2 and MMP9
By RIsearch Structure MIR218-2 Location MMP9 Location Score 
Query:    3' GCUUGAUCUAA--CCAU 5'
          ||::: :|:|   |||:
Target:   5' CGGGUCGGGUGGAGGUG 3'
5-19 113-129 -6.95
The Predicated Binding Sites of MMP9
RBPBD 

					

					

						RsiteDB
						
					

						BindN
						
							 

								
					

					

						BindN+
						
							 

								
					

					

					    RNAbindR
						
                              
	 
								
					

					

					    Pprint
						
                            

								
					



				 
	
            			
	

	
    
	
	  
	 

      

	  
Visualization:
	  
	  

	  Select the center nodes:
	   First Node
	   Second Node
	  Both the Nodes	
 
      
Select the Level of Neighbour:
	   First Neighbour
	   Second Neighbour  
	  

	        
	  

	 
	 
	


 
	 

	  The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
	  the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes. 
	  
The 'First Neighbour' represents the sub-network of direct interacting with the center node, 
	  the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node. 
	  Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
	 


	  

	   
	
	

  





	

		

           			
				
	
                   The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
 
				   The Binding page: representing the predicted binding sites and/or constants.
 
				   The Network page: representing the interaction sub-network of interacting RNA/Protein.