Detail-Interactions: | |
RAID ID: | RRI00000228 |
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RNA/Protein Symbol 1: | DHPS |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | WDR83 mRNA |
RNA/Protein Category 2: | other |
Validated Method: | |
Tissue: | |
PMID: | 22491477 |
Detail description: | Here, we found that the protein-coding gene, deoxyhypusine synthase (DHPS), as the NAT of WDR83, concordantly regulated the expression of WDR83 mRNA and protein. Conversely, WDR83 also regulated DHPS by antisense pairing in a concordant manner. WDR83 and DHPS were capable of forming an RNA duplex at overlapping 3` untranslated regions and this duplex increased their mutual stability, which was required for the bidirectional regulation. |
The Predicated Binding Sites between DHPS and WDR83 | |||||
By miRanda | Structure | Match Score | Energy Score | DHPS Location | WDR83 Location |
The Predicated Binding Sites between DHPS and WDR83 | ||||
By RIsearch | Structure | DHPS Location | WDR83 Location | Score |
Query: 3' CGUCUCUAGAAUAAGAUGGUAUCUGAAG---UCCUU 5' ||:|| ||||| |:| || |||| Target: 5' GCGGA-AUCUUUGGGUGCG---AACCCACAUUGGAA 3' |
1317-1349 | 4-35 | -10.90 | |
The Predicated Binding Sites of WDR83 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.