The Detail Information for This Interaction


  • Detail
  • Binding
  • Network
Detail-Interactions:
RAID ID: RRI00000088
RNA/Protein Symbol 1:ATXN8OS(KLHL1AS)
RNA/Protein Category 1: lncRNA
RNA/Protein Symbol 2: KLHL11 mRNA
RNA/Protein Category 2: mRNA
Validated Method:
Tissue: Brain tissue 
PMID: 11919683 
Detail description:

The evolutionary conservation of this antisense/sense transcriptional organization strongly indicates that KLHL1AS transcripts play a significant biological role in both human and mouse, presumably as a regulator of KLHL1 expression. 

The Predicated Binding Sites between ATXN8OS and KLHL11
By miRanda Structure Match Score Energy Score ATXN8OS Location KLHL11 Location
The Predicated Binding Sites between ATXN8OS and KLHL11
By RIsearch Structure ATXN8OS Location KLHL11 Location Score 
Query:    3' UGUAGGAAACAGUAUUCACUGUAUAUU-AGUCAUUUUG 5'
          :|: |      |:  :|||||:       |:|||:|||
Target:   5' GCGGCGGCG-GCGGCGGUGACGGCGUCGGCGGUAGAAC 3'
1419-1455 3-39 -20.24
The Predicated Binding Sites of KLHL11
RBPBD 

					

					

						RsiteDB
						
					

						BindN
						
							 

								
					

					

						BindN+
						
							 

								
					

					

					    RNAbindR
						
                              
	 
								
					

					

					    Pprint
						
                            

								
					



				 
	
            			
	

	
    
	
	  
	 

      

	  
Visualization:
	  
	  

	  Select the center nodes:
	   First Node
	   Second Node
	  Both the Nodes	
 
      
Select the Level of Neighbour:
	   First Neighbour
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	  The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
	  the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes. 
	  
The 'First Neighbour' represents the sub-network of direct interacting with the center node, 
	  the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node. 
	  Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
	 


	  

	   
	
	

  





	

		

           			
				
	
                   The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
 
				   The Binding page: representing the predicted binding sites and/or constants.
 
				   The Network page: representing the interaction sub-network of interacting RNA/Protein.