Detail-Interactions: | |
RAID ID: | RRI00000084 |
---|---|
RNA/Protein Symbol 1: | KCNQ1OT1 |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | KCNQ1 mRNA |
RNA/Protein Category 2: | mRNA |
Validated Method: | |
Tissue: | |
PMID: | 11562346 |
Detail description: | However, the identification of four additional examples of imprinted protein-coding genes overlapped by antisense noncoding RNAs on their silent allele [UBE3A-as overlapping UBE3A (Rougeulle et al. 1998), KCNQ1OT1 overlapping KCNQ1 (Smilinich et al. 1999), Nesp-as overlapping Nesp (Wroe et al. 2000), and Cop2-as overlapping Cop2 (Lee et al. 2000)] indicated a function for sense/antisense transcription, for example, by promoter occlusion or by the formation of double-stranded interfering RNA on one chromosome. |
The Predicated Binding Sites between KCNQ1OT1 and KCNQ1 | |||||
By miRanda | Structure | Match Score | Energy Score | KCNQ1OT1 Location | KCNQ1 Location |
The Predicated Binding Sites between KCNQ1OT1 and KCNQ1 | ||||
By RIsearch | Structure | KCNQ1OT1 Location | KCNQ1 Location | Score |
Query: 3' AGUGGAAUGGCA----------ACAGCCA-GCUGC 5' |||| |||| ||||| ||:|| Target: 5' UCACG--CCCGUCGGUGACGACGGUCGGGGCGGCG 3' |
14371-14394 | 1-33 | -22.95 | |
The Predicated Binding Sites of KCNQ1 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.