Detail-Interactions: | |
RAID ID: | RRI00000083 |
---|---|
RNA/Protein Symbol 1: | GNAS-AS1(Nesp-as) |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | GNAS mRNA(Nesp) |
RNA/Protein Category 2: | mRNA |
Validated Method: | |
Tissue: | |
PMID: | 11562346 |
Detail description: | However, the identification of four additional examples of imprinted protein-coding genes overlapped by antisense noncoding RNAs on their silent allele [UBE3A-as overlapping UBE3A (Rougeulle et al. 1998), KCNQ1OT1 overlapping KCNQ1 (Smilinich et al. 1999), Nesp-as overlapping Nesp (Wroe et al. 2000), and Cop2-as overlapping Cop2 (Lee et al. 2000)] indicated a function for sense/antisense transcription, for example, by promoter occlusion or by the formation of double-stranded interfering RNA on one chromosome. |
The Predicated Binding Sites between GNAS-AS1 and GNAS | |||||
By miRanda | Structure | Match Score | Energy Score | GNAS-AS1 Location | GNAS Location |
The Predicated Binding Sites between GNAS-AS1 and GNAS | ||||
By RIsearch | Structure | GNAS-AS1 Location | GNAS Location | Score |
Query: 3' GGCCC---GGCAGGCC---CUCCCAGAUGCACCCU---GUC 5' |:|| ||| || ||||| :|| |||| |:| Target: 5' CUGGCUCCCCGCGCGCGUCGAGGG---GCG-GGGAGCUCGG 3' |
1125-1156 | 118-154 | -25.37 | |
The Predicated Binding Sites of GNAS | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.