Detail-Interactions: | |
RAID ID: | RRI00000078 |
---|---|
RNA/Protein Symbol 1: | RN7SL1(7SL RNA) |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | MnSOD mRNA |
RNA/Protein Category 2: | mRNA |
Validated Method: | luciferase reporter assay |
Tissue: | Lung carcinoma cells(A549) |
PMID: | 10924331 |
Detail description: | The MnSOD mRNA 3` UTR contains a 280-bp region (Alu-like element or Alu-E) that shows high homology to human Alu and 7SL sequences. MnSOD 3` UTR probes hybridize to a specific cytoplasmic RNA species of approximately 300 nucleotides. This antisense RNA is most likely 7SL RNA based on its size, ubiquitousness, high levels, and lack of inducibility. Taken together, these results suggest that naturally occurring antisense RNA may bind MnSOD mRNA and repress its expression. |
The Predicated Binding Sites between and | |||||
By miRanda | Structure | Match Score | Energy Score | Location | Location |
The Predicated Binding Sites between and | ||||
By RIsearch | Structure | Location | Location | Score |
The Predicated Binding Sites of MnSOD | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.