Detail-Interactions: | |
RAID ID: | RRI00000077 |
---|---|
RNA/Protein Symbol 1: | TRAF3IP2-AS1(C6UAS) |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | TRAF3IP2 mRNA(C6orf4-6) |
RNA/Protein Category 2: | mRNA |
Validated Method: | |
Tissue: | Fibroblasts cells |
PMID: | 10903453 |
Detail description: | The second gene, C6UAS, is transcribed in the antisense orientation from the complementary strand of C6orf4-6. |
The Predicated Binding Sites between TRAF3IP2-AS1 and TRAF3IP2 | |||||
By miRanda | Structure | Match Score | Energy Score | TRAF3IP2-AS1 Location | TRAF3IP2 Location |
The Predicated Binding Sites between TRAF3IP2-AS1 and TRAF3IP2 | ||||
By RIsearch | Structure | TRAF3IP2-AS1 Location | TRAF3IP2 Location | Score |
Query: 3' UGAUUUGAGGAAGUUUGCUCUGGGACUC-CUCUGAGCU 5' |:| ||||: :|||||| |:| |||| ||: Target: 5' AUUUAACUUAAGACGACGAGAG-AGGGGUGAGAGGCGG 3' |
4820-4856 | 21-57 | -23.26 | |
The Predicated Binding Sites of TRAF3IP2 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.