Detail

Detail-Interactions:
RAID ID:	RRI00000070
RNA/Protein Symbol 1:	HIF1A-AS2(aHIF)
RNA/Protein Category 1:	lncRNA
RNA/Protein Symbol 2:	HIF1A mRNA(HIF1alpha)
RNA/Protein Category 2:	mRNA
Validated Method:	RT-PCR
Tissue:	Nonpapillary renal carcinoma cells
PMID:	9923855
Detail description:	although aHIF is not further induced by hypoxia in nonpapillary disease, it can be induced in lymphocytes where there is a concomitant decrease in HIF1alpha mRNA.

Detail-Interactions:

RAID ID:

RRI00000070

RNA/Protein Symbol 1:

HIF1A-AS2(aHIF)

RNA/Protein Category 1:

lncRNA

RNA/Protein Symbol 2:

HIF1A mRNA(HIF1alpha)

RNA/Protein Category 2:

mRNA

Validated Method:

RT-PCR

Tissue:

Nonpapillary renal carcinoma cells

PMID:

9923855

Detail description:

although aHIF is not further induced by hypoxia in nonpapillary disease, it can be induced in lymphocytes where there is a concomitant decrease in HIF1alpha mRNA.

>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1 Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -----+++++++++++++++++++++++++++-+-----------------++--+---- Confidence: 867534675878688999989898889799772629859997696753462555364266 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: +----+-+-+-----------------------------------------------+-- Confidence: 782726759438967867788897283644839499899989958967794956473426 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: -----------------------------------+++++++++++---+---+-+++++ Confidence: 554386737648789657864758275635224238858898657645768245278959 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: +++-++----------------++++++++++++++-----------------------+ Confidence: 856287423278583749372357567695577844428999998786352385647726 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: +---+---------------------------+------------+--+-------+-+- Confidence: 433263364636326452944978388868755362556688635452644325735454 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: ++-+-+---++--+------------+++++-----------+----------------- Confidence: 882528244673384296458256225857732789896499469969999949555478 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: -------+-+------+--+--+----++-------------------------++-++- Confidence: 825832245552287258562242253465224336738884657548838453652562 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: -------------------+-+------------+-+++++-+++--+------------ Confidence: 443498697968997742243652392784236272456853965635466778872843 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: -----------------+-++++++++++++++++-+----------------------- Confidence: 245274848375473535277997979888767872423774974878489498997598 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------++--+-----------------------+---------+++-++++++-+++-- Confidence: 976335752352263497999997498899884844454724626672866756266462 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: ----------+-++++++-++---++-++-----------+-+-++--+-++++++++++ Confidence: 575533722464657877356233563564255693997853626642537785899789 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: +++++++++++-++------+++++++++--+----+++--------------+++++++ Confidence: 888798786892493464334679696565756452474274355647498774657989 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: +-++-----------+----------+++-++++-++-+++++++--------------- Confidence: 725466377388685557336752456483555657629775575444249679736777 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: +------------+-+----------+-++---------------- Confidence: 5865326433462565225538373542582553976892998594 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1 Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -----------+-++++++++++++-++++-+--------------------+--+-+-- Confidence: 334656555114244578848887519687147289958987995871343157274357 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: -----+-+----------------------------------------------+----- Confidence: 185653566118659899999998699988979669785979734623591924492858 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: --------------------+---+-------------+--+--+----+-+-+--++-+ Confidence: 336278654427576816554377357865345661144324445352857334234625 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: --+-+++++-------+-+----+------------------------+++--------+ Confidence: 244454454423382347462423635538756698879898895321435248928523 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: ----+----------------------------------+---------------+--+- Confidence: 533441154689757752925555387688972472757387644793464546732348 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: -+---+-+-++--+------------++-----------+-------------------- Confidence: 342217233643543394238377213512355685532347367959899969987878 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: ------------------------------------------------------------ Confidence: 968834336366588747747334444546547559999999898978879788886667 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: ------------------+--------------------+-------------------- Confidence: 677698897854867542525275677898888544133426353984772358786985 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: --------------------+--------------------------------------- Confidence: 787576777786364441514234222244472522437975997997598589798796 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------------------------------------------------------------ Confidence: 999888878787696698999999585586662825698987954524445542241353 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: ----------------------------------------------------------++ Confidence: 976873775847587235745776568576376793778945233564695345532236 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: -++---------------------------------++-------------------+++ Confidence: 243211534317628666354253714535746363442233742624549761131436 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: -----------------------+--+++-++++-+------------------------ Confidence: 123188386398485367454643234572447566132223513745358768946697 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: ----------------------+-+-+-++---------+-----+ Confidence: 3855528664764273327617373341461532574675885254 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

>Q16665|HIF1A Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -+------++++++++++++++++++++++++--------------------+--+++++ Confidence: 353344135588578899979998879999884330011001001002100252465766 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: ++++++++-------------------------+----------------+--------- Confidence: 855686581440100000000000000001110600131000000122015133413312 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: ---------+--+---+---------------+--++----++-++++++++++++++++ Confidence: 412421113831631161002000100031435336622325647789797999889989 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: +++++++++++++++++-+-+-----------------------+---+---------++ Confidence: 989899899988978892847432010000000002120200005114613302040255 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: ----+++-------------------------------------------------+++- Confidence: 343466723140020012000000110100004202200101023202001200137783 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: ++++++++++++++-+++-+-+---++++-------+-++-------------------- Confidence: 588869888998884866472524377554344212547821220000000010000000 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000010000100000000000000000 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000001001000000000000000000000000 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------------------------------------------------------------ Confidence: 000000010000000000000000110010000010000000000000000002000100 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: -------------------------------------------+---------------- Confidence: 000000000000101100000000100000000000000133250100000010001000 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: ------------------------------------------------+----++--+++ Confidence: 001111011121011000000000010320021000111000221143542315533866 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: ----------------------------+---+--+------+-----+----------- Confidence: 401100200100000000000011231352136315012023533403531110202002 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: ----+---------------------+-+++--+-----+--+---- Confidence: 30225100021113013111103142538873464432263154030 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -+++---+++++++++++++++++++++++++-------------------++-++++-- Confidence: 346633255659999999999999999996570100000000000021203650695500 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: +-++++++-+----+-++-----------------------------+------------ Confidence: 824438773522324244201000000000000100000000000015003001200000 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: ------------+-----------------------+-++--+++++--+-+++++++-+ Confidence: 000000000000300000021000000010312201325321557952271959778435 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: +++++++++---+---+-+-+---+----------+-+---------+++++-------- Confidence: 365665455211602141535132323000013213240000021224554401000000 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: -+---++--------------------------------+---------+--------+- Confidence: 040205400000000001000000000000000000100400000000240000000170 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: -+++++-+++++---------+--++++++++++--++-+++-++-+------------- Confidence: 057469367956200001120500667989896721361965365141211010110000 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: ------------------+--++-+-+--------------------------------- Confidence: 000000100000011003311433433020001000000101210000011212231010 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: ------------------------------------------------------------ Confidence: 001000000000000011121331231000001000000000012002200100100031 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: ------------------------------------------------------------ Confidence: 000000000000000000001010000000003110000000000000000000000102 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------------------------------------------------------------ Confidence: 000002201010020101000000000000000033210100000000000000000000 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: ------------------------+-++-++++--+------------------------ Confidence: 000001002011122310100102424334544315101210211000000000001121 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: ---------++-------------+++++-++------------------+--+++++++ Confidence: 101000123431101212021012345453432201110121211101203214336656 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: ++++--+--------------------++-++++++++++++-+---------------- Confidence: 553622410001000000000001001342336556685795341000000000012101 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: +-+-+-------------------++++++---------------- Confidence: 4042400110000000100010224445441200000000000011 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest).

The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.

The Predicated Binding Sites between HIF1A-AS2 and HIF1A
By miRanda	Structure	Match Score	Energy Score	HIF1A-AS2 Location	HIF1A Location

The Predicated Binding Sites between HIF1A-AS2 and HIF1A
By RIsearch	Structure	HIF1A-AS2 Location	HIF1A Location	Score
	Query: 3' ACUUGAUCCAAAGCUCUGAGUAAUUCUUCACCCUGCAGUA 5' \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Target: 5' UGAACUAGGUUUCGAGACUCAUUAAGAAGUGGGACGUCAU 3'	2012-2051	2839-2878	-74.51

The Predicated Binding Sites of HIF1A
RBPBD
RsiteDB
BindN	>sp\|Q16665\|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1 Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -----+++++++++++++++++++++++++++-+-----------------++--+---- Confidence: 867534675878688999989898889799772629859997696753462555364266 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: +----+-+-+-----------------------------------------------+-- Confidence: 782726759438967867788897283644839499899989958967794956473426 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: -----------------------------------+++++++++++---+---+-+++++ Confidence: 554386737648789657864758275635224238858898657645768245278959 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: +++-++----------------++++++++++++++-----------------------+ Confidence: 856287423278583749372357567695577844428999998786352385647726 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: +---+---------------------------+------------+--+-------+-+- Confidence: 433263364636326452944978388868755362556688635452644325735454 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: ++-+-+---++--+------------+++++-----------+----------------- Confidence: 882528244673384296458256225857732789896499469969999949555478 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: -------+-+------+--+--+----++-------------------------++-++- Confidence: 825832245552287258562242253465224336738884657548838453652562 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: -------------------+-+------------+-+++++-+++--+------------ Confidence: 443498697968997742243652392784236272456853965635466778872843 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: -----------------+-++++++++++++++++-+----------------------- Confidence: 245274848375473535277997979888767872423774974878489498997598 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------++--+-----------------------+---------+++-++++++-+++-- Confidence: 976335752352263497999997498899884844454724626672866756266462 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: ----------+-++++++-++---++-++-----------+-+-++--+-++++++++++ Confidence: 575533722464657877356233563564255693997853626642537785899789 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: +++++++++++-++------+++++++++--+----+++--------------+++++++ Confidence: 888798786892493464334679696565756452474274355647498774657989 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: +-++-----------+----------+++-++++-++-+++++++--------------- Confidence: 725466377388685557336752456483555657629775575444249679736777 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: +------------+-+----------+-++---------------- Confidence: 5865326433462565225538373542582553976892998594 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
BindN+	>sp\|Q16665\|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1 Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -----------+-++++++++++++-++++-+--------------------+--+-+-- Confidence: 334656555114244578848887519687147289958987995871343157274357 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: -----+-+----------------------------------------------+----- Confidence: 185653566118659899999998699988979669785979734623591924492858 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: --------------------+---+-------------+--+--+----+-+-+--++-+ Confidence: 336278654427576816554377357865345661144324445352857334234625 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: --+-+++++-------+-+----+------------------------+++--------+ Confidence: 244454454423382347462423635538756698879898895321435248928523 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: ----+----------------------------------+---------------+--+- Confidence: 533441154689757752925555387688972472757387644793464546732348 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: -+---+-+-++--+------------++-----------+-------------------- Confidence: 342217233643543394238377213512355685532347367959899969987878 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: ------------------------------------------------------------ Confidence: 968834336366588747747334444546547559999999898978879788886667 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: ------------------+--------------------+-------------------- Confidence: 677698897854867542525275677898888544133426353984772358786985 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: --------------------+--------------------------------------- Confidence: 787576777786364441514234222244472522437975997997598589798796 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------------------------------------------------------------ Confidence: 999888878787696698999999585586662825698987954524445542241353 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: ----------------------------------------------------------++ Confidence: 976873775847587235745776568576376793778945233564695345532236 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: -++---------------------------------++-------------------+++ Confidence: 243211534317628666354253714535746363442233742624549761131436 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: -----------------------+--+++-++++-+------------------------ Confidence: 123188386398485367454643234572447566132223513745358768946697 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: ----------------------+-+-+-++---------+-----+ Confidence: 3855528664764273327617373341461532574675885254 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
RNAbindR	>Q16665\|HIF1A Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -+------++++++++++++++++++++++++--------------------+--+++++ Confidence: 353344135588578899979998879999884330011001001002100252465766 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: ++++++++-------------------------+----------------+--------- Confidence: 855686581440100000000000000001110600131000000122015133413312 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: ---------+--+---+---------------+--++----++-++++++++++++++++ Confidence: 412421113831631161002000100031435336622325647789797999889989 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: +++++++++++++++++-+-+-----------------------+---+---------++ Confidence: 989899899988978892847432010000000002120200005114613302040255 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: ----+++-------------------------------------------------+++- Confidence: 343466723140020012000000110100004202200101023202001200137783 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: ++++++++++++++-+++-+-+---++++-------+-++-------------------- Confidence: 588869888998884866472524377554344212547821220000000010000000 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000010000100000000000000000 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000001001000000000000000000000000 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------------------------------------------------------------ Confidence: 000000010000000000000000110010000010000000000000000002000100 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: -------------------------------------------+---------------- Confidence: 000000000000101100000000100000000000000133250100000010001000 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: ------------------------------------------------+----++--+++ Confidence: 001111011121011000000000010320021000111000221143542315533866 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: ----------------------------+---+--+------+-----+----------- Confidence: 401100200100000000000011231352136315012023533403531110202002 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: ----+---------------------+-+++--+-----+--+---- Confidence: 30225100021113013111103142538873464432263154030 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
Pprint	Sequence: MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM Prediction: -+++---+++++++++++++++++++++++++-------------------++-++++-- Confidence: 346633255659999999999999999996570100000000000021203650695500 Sequence: RLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM Prediction: +-++++++-+----+-++-----------------------------+------------ Confidence: 824438773522324244201000000000000100000000000015003001200000 Sequence: GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR Prediction: ------------+-----------------------+-++--+++++--+-+++++++-+ Confidence: 000000000000300000021000000010312201325321557952271959778435 Sequence: TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK Prediction: +++++++++---+---+-+-+---+----------+-+---------+++++-------- Confidence: 365665455211602141535132323000013213240000021224554401000000 Sequence: TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV Prediction: -+---++--------------------------------+---------+--------+- Confidence: 040205400000000001000000000000000000100400000000240000000170 Sequence: TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV Prediction: -+++++-+++++---------+--++++++++++--++-+++-++-+------------- Confidence: 057469367956200001120500667989896721361965365141211010110000 Sequence: LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET Prediction: ------------------+--++-+-+--------------------------------- Confidence: 000000100000011003311433433020001000000101210000011212231010 Sequence: DDQQLEEVPLYNDVMLPSPNEKLQNINLAMSPLPTAETPKPLRSSADPALNQEVALKLEP Prediction: ------------------------------------------------------------ Confidence: 001000000000000011121331231000001000000000012002200100100031 Sequence: NPESLELSFTMPQIQDQTPSPSDGSTRQSSPEPNSPSEYCFYVDSDMVNEFKLELVEKLF Prediction: ------------------------------------------------------------ Confidence: 000000000000000000001010000000003110000000000000000000000102 Sequence: AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSASPESASPQSTVT Prediction: ------------------------------------------------------------ Confidence: 000002201010020101000000000000000033210100000000000000000000 Sequence: VFQQTQIQEPTANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYR Prediction: ------------------------+-++-++++--+------------------------ Confidence: 000001002011122310100102424334544315101210211000000000001121 Sequence: DTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKILALQNAQRKR Prediction: ---------++-------------+++++-++------------------+--+++++++ Confidence: 101000123431101212021012345453432201110121211101203214336656 Sequence: KMEHDGSLFQAVGIGTLLQQPDDHAATTSLSWKRVKGCKSSEQNGMEQKTIILIPSDLAC Prediction: ++++--+--------------------++-++++++++++++-+---------------- Confidence: 553622410001000000000001001342336556685795341000000000012101 Sequence: RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN Prediction: +-+-+-------------------++++++---------------- Confidence: 4042400110000000100010224445441200000000000011 *Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *Confidence: from level 0 (lowest) to level 9 (highest).

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