Detail-Interactions: | |
RAID ID: | RRI00000069 |
---|---|
RNA/Protein Symbol 1: | WT1-AS(WIT1) |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | WT1 mRNA |
RNA/Protein Category 2: | mRNA |
Validated Method: | |
Tissue: | |
PMID: | 8290269 |
Detail description: | WT1, one of the two divergent transcripts mapping to this locus encodes a zinc finger protein that is likely a transcriptional regulator. The other transcript, WIT1, encodes a product of unknown function that is subject to alternate splicing in the region immediately 5` of the WT1 gene. |
The Predicated Binding Sites between WT1-AS and WT1 | |||||
By miRanda | Structure | Match Score | Energy Score | WT1-AS Location | WT1 Location |
The Predicated Binding Sites between WT1-AS and WT1 | ||||
By RIsearch | Structure | WT1-AS Location | WT1 Location | Score |
Query: 3' GGGGAAAAAAAUGGGGAAAAGAAAA----ACCACGAGAGAGGG 5' ||| |||| ||| ||| ||||| Target: 5' CCCACCC----ACCCACCCACUUACUCAUCCACCCUCCCUCCC 3' |
2275-2313 | 83-121 | -17.88 | |
The Predicated Binding Sites of WT1 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.