The Detail Information for This Interaction


  • Detail
  • Binding
  • Network
Detail-Interactions:
RAID ID: RRI00000028
RNA/Protein Symbol 1:KRASP1(KRAS1P)
RNA/Protein Category 1: lncRNA
RNA/Protein Symbol 2: MIRLET7C(let-7c)
RNA/Protein Category 2: miRNA
Validated Method: Dual Luciferase reporter assay, RT-PCR
Tissue:  
PMID: 20577206 
Detail description:

Further examples of such conservation include: miR-34 family binding site on CDK4PS (Supplementary Fig. 12); miR-182 binding site on FOXO3B (Supplementary Fig. 13); miR-17 family binding site on E2F3P1 (Supplementary Fig. 14); miR-143 and let-7 family binding sites on KRAS1P (Supplementary Fig. 15). 

The Predicated Binding Sites between MIRLET7C and KRASP1
By miRanda Structure Match Score Energy Score MIRLET7C Location KRASP1 Location 
   Query:    3' uugGUAUGUUGGAUGAUGGAGu 5'
                   |||:||::: |:|||:|| 
   Ref:      5' gugCAUGCAGUUGAUUACUUCu 3'
139.00 -19.66 2-20 1029-1050 
   Query:    3' uuGGUAUGUUGGAUGAUGGAGu 5'
                  || |||| |:||:| |||| 
   Ref:      5' ucCCUUACAUCUUAUUUCCUCa 3'
132.00 -20.24 2-21 2698-2719 
   Query:    3' uuGGUA-UGUUGGAUGAUGGAGu 5'
                  ||||  :: |:||||::||| 
   Ref:      5' cgCCAUCUUGUCUUACUGUCUCa 3'
131.00 -22.26 2-21 3095-3117
The Predicated Binding Sites between MIRLET7C and KRASP1
By RIsearch Structure MIRLET7C Location KRASP1 Location Score 
Query:    3' GGUAGUAGGUUGUAUGGUU 5'
          :|:||||::|: |||||||
Target:   5' UCGUCAUUUAGAAUACCAA 3'
4-22 2634-2652 -19.71
The Predicated Binding Sites of KRASP1
RBPBD 

					

					

						RsiteDB
						
					

						BindN
						
							 

								
					

					

						BindN+
						
							 

								
					

					

					    RNAbindR
						
                              
	 
								
					

					

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Visualization:
	  
	  

	  Select the center nodes:
	   First Node
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Select the Level of Neighbour:
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	  The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
	  the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes. 
	  
The 'First Neighbour' represents the sub-network of direct interacting with the center node, 
	  the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node. 
	  Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
	 


	  

	   
	
	

  





	

		

           			
				
	
                   The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
 
				   The Binding page: representing the predicted binding sites and/or constants.
 
				   The Network page: representing the interaction sub-network of interacting RNA/Protein.