The Detail Information for This Interaction


  • Detail
  • Binding
  • Network
Detail-Interactions:
RAID ID: RRI00000020
RNA/Protein Symbol 1:FOXO3B
RNA/Protein Category 1: lncRNA
RNA/Protein Symbol 2: MIR182(miR-182)
RNA/Protein Category 2: miRNA
Validated Method: Dual Luciferase reporter assay, RT-PCR
Tissue:  
PMID: 20577206 
Detail description:

Further examples of such conservation include: miR-34 family binding site on CDK4PS (Supplementary Fig. 12); miR-182 binding site on FOXO3B (Supplementary Fig. 13); miR-17 family binding site on E2F3P1 (Supplementary Fig. 14); miR-143 and let-7 family binding sites on KRAS1P (Supplementary Fig. 15). 

The Predicated Binding Sites between MIR182 and FOXO3B
By miRanda Structure Match Score Energy Score MIR182 Location FOXO3B Location 
   Query:    3' ucacACUCAAGA--UG-GUAACGGUUu 5'
                    | || |||  || ||||||||| 
   Ref:      5' cagcUCAGCUCUCCACUCAUUGCCAAa 3'
162.00 -17.76 2-21 3173-3199 
   Query:    3' ucacacucaagauGGUAACGGUUu 5'
                             || ||||||| 
   Ref:      5' cuacagagaaaacCCUUUGCCAAa 3'
147.00 -16.32 2-12 2334-2357 
   Query:    3' ucACACUCAAGAUGGUAACGGUUu 5'
                  || || | :| || || |||| 
   Ref:      5' uuUGGGAAUCUUCCCCUUUCCAAa 3'
134.00 -12.04 2-23 7108-7131
The Predicated Binding Sites between MIR182 and FOXO3B
By RIsearch Structure MIR182 Location FOXO3B Location Score 
GGCAAUGGUAGAACUCA----CACU
|||  |||:|| ||:|     ||||
CCGAGACCGUCGUGGGGACGGGUGA
4-24 5104-5128 -20.63
The Predicated Binding Sites of FOXO3B
RBPBD 

					

					

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						BindN
						
							 

								
					

					

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Visualization:
	  
	  

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	  The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
	  the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes. 
	  
The 'First Neighbour' represents the sub-network of direct interacting with the center node, 
	  the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node. 
	  Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
	 


	  

	   
	
	

  





	

		

           			
				
	
                   The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
 
				   The Binding page: representing the predicted binding sites and/or constants.
 
				   The Network page: representing the interaction sub-network of interacting RNA/Protein.