Detail-Interactions: | |
RAID ID: | RRI00000019 |
---|---|
RNA/Protein Symbol 1: | E2F3P1 |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | MIR93(miR-93) |
RNA/Protein Category 2: | miRNA |
Validated Method: | Dual Luciferase reporter assay, RT-PCR |
Tissue: | |
PMID: | 20577206 |
Detail description: | Further examples of such conservation include: miR-34 family binding site on CDK4PS (Supplementary Fig. 12); miR-182 binding site on FOXO3B (Supplementary Fig. 13); miR-17 family binding site on E2F3P1 (Supplementary Fig. 14); miR-143 and let-7 family binding sites on KRAS1P (Supplementary Fig. 15). |
The Predicated Binding Sites between MIR93 and E2F3P1 | |||||
By miRanda | Structure | Match Score | Energy Score | MIR93 Location | E2F3P1 Location |
Query: 3' gaUGGACGUGCUUGUCGUGAAAc 5' || |:: | ||||||||| Ref: 5' agACAGGUGACACCAGCACUUUa 3' |
157.00 | -16.40 | 2-22 | 3128-3150 | |
Query: 3' gaUGGACGUGCUUGUCGUGAAac 5' |:|| | : ||:||||:|| Ref: 5' caAUCUUCCUUAAUAGCAUUUca 3' |
133.00 | -13.13 | 3-22 | 1700-1722 | |
Query: 3' gaugGACGUGCUUGUCGUGAAac 5' :||:::||:::|||:|| Ref: 5' cccgUUGUGUGAGUGGCAUUUcc 3' |
131.00 | -19.12 | 3-20 | 2552-2574 |
The Predicated Binding Sites between MIR93 and E2F3P1 | ||||
By RIsearch | Structure | MIR93 Location | E2F3P1 Location | Score |
Query: 3' UGCUGU-UCG-UGCAGGU 5' |||||| || |||||: Target: 5' ACGACAAAGGGUCGUCCG 3' |
6-21 | 1684-1701 | -18.78 |
The Predicated Binding Sites of E2F3P1 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.