The Detail Information for This Interaction


  • Detail
  • Binding
  • Network
Detail-Interactions:
RAID ID: RRI00000018
RNA/Protein Symbol 1:E2F3P1
RNA/Protein Category 1: lncRNA
RNA/Protein Symbol 2: MIR20A(miR-20a)
RNA/Protein Category 2: miRNA
Validated Method: Dual Luciferase reporter assay, RT-PCR
Tissue:  
PMID: 20577206 
Detail description:

Further examples of such conservation include: miR-34 family binding site on CDK4PS (Supplementary Fig. 12); miR-182 binding site on FOXO3B (Supplementary Fig. 13); miR-17 family binding site on E2F3P1 (Supplementary Fig. 14); miR-143 and let-7 family binding sites on KRAS1P (Supplementary Fig. 15). 

The Predicated Binding Sites between MIR20A and E2F3P1
By miRanda Structure Match Score Energy Score MIR20A Location E2F3P1 Location 
   Query:    3' gaUGGACGUGAUAUUCGUGAAAu 5'
                  ||  |::  |  |||||||| 
   Ref:      5' agACAGGUGACACCAGCACUUUa 3'
149.00 -15.27 2-22 3128-3150 
   Query:    3' gaUGGACGUGAUAUUCGUGAAAu 5'
                  |::| ||:| | |||| ||| 
   Ref:      5' acAUUUUCAUUUUUAGCAGUUUu 3'
137.00 -11.16 2-22 3851-3873 
   Query:    3' gaUGGACGUGAUAUUCGUGAAau 5'
                  |:|| | :||  ||||:||  
   Ref:      5' caAUCUUCCUUAAUAGCAUUUca 3'
129.00 -11.11 3-22 1700-1722
The Predicated Binding Sites between MIR20A and E2F3P1
By RIsearch Structure MIR20A Location E2F3P1 Location Score 
Query:    3' AAAGUGCUUAUAGUGCA-----GGUAG 5'
          |||:  |::|:||||||     :||||
Target:   5' UUUUUGGGGUGUCACGUAAAGGUCAUC 3'
2-23 3345-3371 -17.94
The Predicated Binding Sites of E2F3P1
RBPBD 

					

					

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						BindN
						
							 

								
					

					

						BindN+
						
							 

								
					

					

					    RNAbindR
						
                              
	 
								
					

					

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Visualization:
	  
	  

	  Select the center nodes:
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	  The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
	  the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes. 
	  
The 'First Neighbour' represents the sub-network of direct interacting with the center node, 
	  the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node. 
	  Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
	 


	  

	   
	
	

  





	

		

           			
				
	
                   The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
 
				   The Binding page: representing the predicted binding sites and/or constants.
 
				   The Network page: representing the interaction sub-network of interacting RNA/Protein.