Detail-Interactions: | |
RAID ID: | RRI00000016 |
---|---|
RNA/Protein Symbol 1: | E2F3P1 |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | MIR106B(miR-106b) |
RNA/Protein Category 2: | miRNA |
Validated Method: | Dual Luciferase reporter assay, RT-PCR |
Tissue: | |
PMID: | 20577206 |
Detail description: | Further examples of such conservation include: miR-34 family binding site on CDK4PS (Supplementary Fig. 12); miR-182 binding site on FOXO3B (Supplementary Fig. 13); miR-17 family binding site on E2F3P1 (Supplementary Fig. 14); miR-143 and let-7 family binding sites on KRAS1P (Supplementary Fig. 15). |
The Predicated Binding Sites between MIR106B and E2F3P1 | |||||
By miRanda | Structure | Match Score | Energy Score | MIR106B Location | E2F3P1 Location |
Query: 3' uagacgugacaGUCGUGAAAu 5' ||||||||| Ref: 5' acaggugacacCAGCACUUUa 3' |
150.00 | -17.05 | 2-11 | 3130-3150 | |
Query: 3' uaGACGUGACAGUCGUGAAAu 5' :| ||:| |:|||| ||| Ref: 5' auUUUCAUUUUUAGCAGUUUu 3' |
135.00 | -12.64 | 2-20 | 3853-3873 | |
Query: 3' uagACGUGAC-AGUCGUGAAAu 5' || |:|| |: | ||||| Ref: 5' uugUGGAUUGUUUUGAACUUUu 3' |
125.00 | -11.87 | 2-19 | 2099-2120 |
The Predicated Binding Sites between MIR106B and E2F3P1 | ||||
By RIsearch | Structure | MIR106B Location | E2F3P1 Location | Score |
Query: 3' AGUGCUGA-CAGUGCAG 5' ||:|||| ||||| Target: 5' UCGCGACCACCGACGUC 3' |
4-19 | 241-257 | -16.29 |
The Predicated Binding Sites of E2F3P1 | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.