Detail-Interactions: | |
RAID ID: | RRI00000001 |
---|---|
RNA/Protein Symbol 1: | XIST |
RNA/Protein Category 1: | lncRNA |
RNA/Protein Symbol 2: | TSIX |
RNA/Protein Category 2: | lncRNA |
Validated Method: | RT-PCR |
Tissue: | Female somatic tissue |
PMID: | 15125641 |
Detail description: | Our results showed that the transcript detected consistently in male gonads and variably in somatic organs represents XIST antisense RNA and that XIST sense and antisense RNAs are co-expressed in female somatic tissues and cultured cells including cells of sex chromosome aneuploids (XXY and XXX). |
The Predicated Binding Sites between XIST and TSIX | |||||
By miRanda | Structure | Match Score | Energy Score | XIST Location | TSIX Location |
The Predicated Binding Sites between XIST and TSIX | ||||
By RIsearch | Structure | XIST Location | TSIX Location | Score |
Query: 3' CUAUUAUA-CUGGGAUAUUCC---GUUUACCCUU-GGCAUUGCU 5' |:||: |||| ||| |: || ||| |||: Target: 5' GGUAGC-AGCACCCC-GAAGACCCCGU---CGAUCCCG--ACGG 3' |
3015-3053 | 1-37 | -12.77 | |
The Predicated Binding Sites of TSIX | |
RBPBD | |
RsiteDB | |
BindN | |
BindN+ | |
RNAbindR | |
Pprint |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.