| Detail-Interactions: | |
| RAID ID: | RPI00001596 |
|---|---|
| RNA/Protein Symbol 1: | SNORD3A(U3) |
| RNA/Protein Category 1: | snoRNA |
| RNA/Protein Symbol 2: | MPHOSPH10(MPP10) |
| RNA/Protein Category 2: | Protein |
| Validated Method: | Immunoprecipitation |
| Tissue: | HeLa cells |
| PMID: | 9450966 |
| Detail description: | This association of MPP10 with U3 snoRNA was stable to 400 mM salt and suggested that MPP10 is a component of the human U3 small nucleolar ribonucleoprotein. |
| The Predicated Binding Sites between SNORD3A and MPHOSPH10 | |||||
| By miRanda | Structure | Match Score | Energy Score | SNORD3A Location | MPHOSPH10 Location |
| The Predicated Binding Sites between SNORD3A and MPHOSPH10 | ||||
| By RIsearch | Structure | SNORD3A Location | MPHOSPH10 Location | Score |
| The Predicated Binding Sites of MPHOSPH10 | |
| RBPBD | |
| RsiteDB | |
| BindN |
>sp|O00566|MPP10_HUMAN U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2 Sequence: MAPQVWRRRTLERCLTEVGKATGRPECFLTIQEGLASKFTSLTKVLYDFNKILENGRIHG Prediction: ---+--+++--++------+++-+-------------+-++-++------------+-++ Confidence: 894543657256778236484728535695976656343457458938974884358665 Sequence: SPLQKLVIENFDDEQIWQQLELQNEPILQYFQNAVSETINDEDISLLPESEEQEREEDGS Prediction: +---+-------------------------------------------------+----- Confidence: 527258996799986967797856878867944772348588795886522222645453 Sequence: EIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKSDLRKSPVFSDEDSDLDFDISKL Prediction: ------------------------------+-+++++++-++++--------------+- Confidence: 382566488978989979457626644564635857889287646426684795868264 Sequence: EQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEEEEDIDFFEDI Prediction: -++++-+++++++++-+---------------------+-+-++--+------------- Confidence: 254583789798979252698748929578693943744252663343779999999999 Sequence: DSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEE Prediction: -----------++++++++++++-+------------------------+---------- Confidence: 735674655437895999989992722788779735678239576353242655798798 Sequence: AEELSISETDEDDDLQENEDNKQHKESLKRVTFALPDDAETEDTGVLNVKKNSDEVKSSF Prediction: --------------------+++++++-++-------------+---+-++++++-++++ Confidence: 976938233667768464236755856356934896566446456546467564546664 Sequence: EKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEE Prediction: -+++-+------------------+-----+-++++++-------------+-------- Confidence: 298628234376285247743342462755626785462687769896499586386466 Sequence: TTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKL Prediction: -----------+-+--------++++++---+--+++---+--+++------------+- Confidence: 338696687245872494777774674823263266752452364662475948773756 Sequence: NQQKTAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEEVAP Prediction: ++-++-+----------------------------------------------------- Confidence: 452653423367484963888398929878469568537574593883484784987994 Sequence: VSVSDAALLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKRMKIKEKEKRRKLLE Prediction: --------------+---+--+-++---++++++++++++++++++-+-+++++++++-+ Confidence: 938259888865565322722576723278589999999999999928297988877524 Sequence: KSSVDQAGKYSKTVASEKLKQLTKTGKASFIKDEGKDKALKSSQAFFSKLQDQVKMQIND Prediction: +-+-+++-+++++--+-+-++-+++-+----+---+-++-+-++----+----------+ Confidence: 524558526568723725565468727224653346364472554452575438273724 Sequence: AKKTEKKKKKRQDISVHKLKL Prediction: -++++++++++++-+--+-+- Confidence: 588999999997535634757 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| BindN+ |
>sp|O00566|MPP10_HUMAN U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2 Sequence: MAPQVWRRRTLERCLTEVGKATGRPECFLTIQEGLASKFTSLTKVLYDFNKILENGRIHG Prediction: ---+-+++++--+--+---+++++----------------+--+------------+-+- Confidence: 241624656461657424163637315385956787226237536815741383248451 Sequence: SPLQKLVIENFDDEQIWQQLELQNEPILQYFQNAVSETINDEDISLLPESEEQEREEDGS Prediction: ++---------------------------------------------------------- Confidence: 647359997374542524587778967888959998789798798998948979899998 Sequence: EIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKSDLRKSPVFSDEDSDLDFDISKL Prediction: ------------------------------------------------------------ Confidence: 887996786868899979989988736498798585566822657789897999988749 Sequence: EQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEEEEDIDFFEDI Prediction: ----------+--+---------------------------------------------- Confidence: 737515234233242431685642748847589996998899587888978989989699 Sequence: DSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEE Prediction: ------------------------------------------------------------ Confidence: 877888876564238258468358557647556566987547586322322569889896 Sequence: AEELSISETDEDDDLQENEDNKQHKESLKRVTFALPDDAETEDTGVLNVKKNSDEVKSSF Prediction: ------------------------------------------------------------ Confidence: 998948756887589668752452164734967999999899889877855667972313 Sequence: EKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEE Prediction: -----------------------+--+------------------------+-------- Confidence: 722472565688798577852235153354121225539899989777275554177698 Sequence: TTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKL Prediction: -----------+-+--------+--------+-----------+-+-------------- Confidence: 679797788234744461566742534384534314388764642434487999984717 Sequence: NQQKTAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEEVAP Prediction: ------------+----------------------------------------------- Confidence: 556349787467387856989699759667447444325464796984684587976796 Sequence: VSVSDAALLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKRMKIKEKEKRRKLLE Prediction: --------------+------------------+-+-++++++++++++++++++++--- Confidence: 947338878965544311235292444833424314278688886967697768784141 Sequence: KSSVDQAGKYSKTVASEKLKQLTKTGKASFIKDEGKDKALKSSQAFFSKLQDQVKMQIND Prediction: -++--+-----+------------+-+----+---+-++-++++----+---------+- Confidence: 134324251324345242722321323313642536163354554463354526142431 Sequence: AKKTEKKKKKRQDISVHKLKL Prediction: -++++++++++---+--+-+- Confidence: 286569897881235513463 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| RNAbindR |
>O00566|MPHOSPH10 Sequence: MAPQVWRRRTLERCLTEVGKATGRPECFLTIQEGLASKFTSLTKVLYDFNKILENGRIHG Prediction: ---+-++++--------------------------------------------------- Confidence: 124615558213300100010001100101011000000100011001000000000031 Sequence: SPLQKLVIENFDDEQIWQQLELQNEPILQYFQNAVSETINDEDISLLPESEEQEREEDGS Prediction: ------------------------------------------------------------ Confidence: 321121002221023121101100000000000000000000000000000000000000 Sequence: EIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKSDLRKSPVFSDEDSDLDFDISKL Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: EQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEEEEDIDFFEDI Prediction: ------------------------------------------------------------ Confidence: 000000000000011120001110240110000000000000000000000000000000 Sequence: DSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEE Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: AEELSISETDEDDDLQENEDNKQHKESLKRVTFALPDDAETEDTGVLNVKKNSDEVKSSF Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000011 Sequence: EKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEE Prediction: ----------------------------------+--+----------+--+-------- Confidence: 011002010100000000000212211322443464353101000001511521200110 Sequence: TTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKL Prediction: -----------+---------------------------------++-+----------- Confidence: 020001011345231410211022000000100020000000041753622020000000 Sequence: NQQKTAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEEVAP Prediction: ----------------------------++++-+++-++--------------------- Confidence: 000000000000000010000000120457683975386020100012111101011123 Sequence: VSVSDAALLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKRMKIKEKEKRRKLLE Prediction: -+-+--+----+--+-+++-------++++++++++++++++++++++++++++++++-+ Confidence: 251532543445336367534202326556776777898899889999899898877535 Sequence: KSSVDQAGKYSKTVASEKLKQLTKTGKASFIKDEGKDKALKSSQAFFSKLQDQVKMQIND Prediction: +-+--+++++++-------++-+++++++++-+++++++++++++++++----------- Confidence: 536345757766344233266469789557647677787589988975844232112122 Sequence: AKKTEKKKKKRQDISVHKLKL Prediction: ---++++++++++++++++++- Confidence: 2435598999999898997980 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| Pprint |
Sequence: MAPQVWRRRTLERCLTEVGKATGRPECFLTIQEGLASKFTSLTKVLYDFNKILENGRIHG Prediction: --+++---++--+---+------+-+-+----------------------------+--- Confidence: 234433313312622241010026343500000000010010010021001000237223 Sequence: SPLQKLVIENFDDEQIWQQLELQNEPILQYFQNAVSETINDEDISLLPESEEQEREEDGS Prediction: ++-----------++--------------------------------------------- Confidence: 440000002130133030000000000000000000000000000010000000000000 Sequence: EIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKSDLRKSPVFSDEDSDLDFDISKL Prediction: ------------------------------------------------------------ Confidence: 001000001000000000000002003001000001102122012211000010000011 Sequence: EQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEERKDDNDEEEEDIDFFEDI Prediction: -+--+++++++++-+--------------------------------------------- Confidence: 233244644344415101000000000010121000100000000000000000000000 Sequence: DSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNVHDDELDSNKEDDEIAEEE Prediction: ----------------------------------------------++-++--------- Confidence: 001100000120131222310000000000000120010013101153354200000001 Sequence: AEELSISETDEDDDLQENEDNKQHKESLKRVTFALPDDAETEDTGVLNVKKNSDEVKSSF Prediction: -----------------------------------------------++-------++-- Confidence: 011322020101000010202010100001011111001000001124333331204333 Sequence: EKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEE Prediction: --+-----++----------------+---+++++------------------------- Confidence: 034003113500010000000003005231554682130000000000300220200000 Sequence: TTLQLEDIIKQRIRDQAWDDVVRKEKPKEDAYEYKKRLTLDHEKSKLSLAEIYEQEYIKL Prediction: ---------------+++----------------------------+------------- Confidence: 000000000001010645012011020000002032200000022042000000000000 Sequence: NQQKTAEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEEVAP Prediction: -------------------------------------+---------------------- Confidence: 122220202010100000000000000000000000042000000000000000000000 Sequence: VSVSDAALLAPEEIKEKNKAGDIKTAAEKTATDKKRERRKKKYQKRMKIKEKEKRRKLLE Prediction: ------------------+-++--------++++++++++++++++++++++++++++++ Confidence: 000000000000113013524523330122636446568979999999999869888746 Sequence: KSSVDQAGKYSKTVASEKLKQLTKTGKASFIKDEGKDKALKSSQAFFSKLQDQVKMQIND Prediction: +++++++-++++-----+----------+-----------------------------+- Confidence: 785445335445322324120002032133030203233221221200300010313253 Sequence: AKKTEKKKKKRQDISVHKLKL Prediction: ++++++++++++++------- Confidence: 477566756764652112132 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest). |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.