| Detail-Interactions: | |
| RAID ID: | RPI00001595 |
|---|---|
| RNA/Protein Symbol 1: | RNU7-1(U7) |
| RNA/Protein Category 1: | snoRNA |
| RNA/Protein Symbol 2: | LSM11(Lsm11) |
| RNA/Protein Category 2: | Protein |
| Validated Method: | |
| Tissue: | HeLa cells |
| PMID: | 12975319 |
| Detail description: | Thus, the U7-specific Lsm11 protein not only specifies the assembly of the U7 Sm core but also fulfills an important role in U7 snRNP-mediated histone mRNA processing. |
| The Predicated Binding Sites between RNU7-1 and LSM11 | |||||
| By miRanda | Structure | Match Score | Energy Score | RNU7-1 Location | LSM11 Location |
| The Predicated Binding Sites between RNU7-1 and LSM11 | ||||
| By RIsearch | Structure | RNU7-1 Location | LSM11 Location | Score |
| The Predicated Binding Sites of LSM11 | |
| RBPBD | LSmx1 |
| RsiteDB | |
| BindN |
>sp|P83369|LSM11_HUMAN U7 snRNA-associated Sm-like protein LSm11 OS=Homo sapiens GN=LSM11 PE=1 SV=2 Sequence: MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE Prediction: ---+-++-+++++++++++++++----+------------+-----+------------- Confidence: 545437529877589859788493232553787999828478326345264675478675 Sequence: SFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAK Prediction: ---+---+++++++++++++--++--+--++++++++++++++-----+--+-++----- Confidence: 357822499999998949452347344227599999999664533232842777665752 Sequence: EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLR Prediction: -------++++++++++++++++---+-------------+--+---+-+---+--+--+ Confidence: 754444265599999999956964527776347346329366774565755355335558 Sequence: GVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD Prediction: -------------------------+++---+-+-++++----+---+---+++++++++ Confidence: 564277999993975999458432275453273647456627266755826575678976 Sequence: SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGR Prediction: ++------+-++++++++-+--+---+--+++++++++++++++-+++-+++++++++++ Confidence: 562345326348788765254647239327797999979846773757287578566869 Sequence: TTRTDGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ Prediction: ++++++++-+++-++-++-+++++++++++++----------------+----------- Confidence: 789885773666258366299999999999893323274225952969497589996994 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| BindN+ |
>sp|P83369|LSM11_HUMAN U7 snRNA-associated Sm-like protein LSm11 OS=Homo sapiens GN=LSM11 PE=1 SV=2 Sequence: MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE Prediction: +--+-++-+++++++++++++++-----------------+--+-++-+----------- Confidence: 412626418646365558566473362254669687518266152442432431155655 Sequence: SFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAK Prediction: ---++--+++++++++-++-+--------+++++++++++--+----+++++-++----- Confidence: 147532188889798815313421453325478897888533312115836847553672 Sequence: EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLR Prediction: ------++-++++++++++++++--++------------++--+---+-+-+-+--++-+ Confidence: 663422471598889989944852346343123232116472671254754466118336 Sequence: GVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD Prediction: --------------+--------+++++--++-+-+--+----+---+---+++++++-- Confidence: 233267757851234566275435463432462444124528233644614434446323 Sequence: SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGR Prediction: -++-----+--+---++--+----+-+--+++++++++++-+++---+-+---+---+-+ Confidence: 143677443425122632235315427325396969878743346123541316122516 Sequence: TTRTDGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ Prediction: +++++--+-+++-++--+-+++++++++++++--------++------+----------- Confidence: 446532144444366334378778999996781222165244821625444378782661 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| RNAbindR |
>P83369|LSM11 Sequence: MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE Prediction: -----------+-------------------+---------------+-++++++----- Confidence: 231224113315224422100141112324171012033121221336389667724433 Sequence: SFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAK Prediction: -----------+-+---------------------------------+--+--------+ Confidence: 311231213225352442241321101111132001111001110245425402421135 Sequence: EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLR Prediction: -------+--+++--+-+++--+----------++-+---+---++++++++++++++++ Confidence: 111104353475533547874460002000022553621354245689796989999988 Sequence: GVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD Prediction: ++--++-++++++-+-----------++++++--++-++--------------------- Confidence: 984458457569715000240224346895884475375420240002010110000111 Sequence: SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGR Prediction: ----------------------------------+------------------------- Confidence: 010000002101202101020310101010012254223110211201100000011023 Sequence: TTRTDGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ Prediction: -----------+------------++++++++++++++++++-++-+-+--+----+--+ Confidence: 113212244136214122114433657677585666866797177052824541016026 Sequence: Prediction: - Confidence: 0 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| Pprint |
Sequence: MEERERGARSAGAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE Prediction: ---+++++++++++-+-------------------------------------------- Confidence: 233646467777453432212020000000000000000000010001000000000000 Sequence: SFLRTGVRGGGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPAPDPERIQRLRRLMVAK Prediction: -----++++++++++++++++++-------+++++++++-+++-++--+--+-++-+-++ Confidence: 200326898999999989974641000023777794666245524331422416526236 Sequence: EEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLR Prediction: +++-++++++++++++++++++++--+--------+-+-++--++------+-+++++++ Confidence: 653355686899899999965554205022112213241472153232223415667546 Sequence: GVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKEAD Prediction: +----------+-------------------------------+-------+-+-++--- Confidence: 330200010224000000000000100221231312111100040000021535244321 Sequence: SKSAVEDSTLSRYSQTSTWKLASVWGRADTGRGSHKRSRSVPSSLQASAREESRSELSGR Prediction: ---+--------+---------+---++++++++++++++++++-+---+--++-++-++ Confidence: 032300000002422212220131336668999997967536451412041144144344 Sequence: TTRTDGSSVGGTFSRATTLSRGQSRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ Prediction: -+++--++-++---+--+++++++++++++++-+--+----------------------- Confidence: 356332643453114133558787975887463322400233003021200010012013 Sequence: Prediction: Confidence: ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest). |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.