| Detail-Interactions: | |
| RAID ID: | RPI00001593 |
|---|---|
| RNA/Protein Symbol 1: | SCARNA10(U85) |
| RNA/Protein Category 1: | snoRNA |
| RNA/Protein Symbol 2: | GAR1(Gar1p) |
| RNA/Protein Category 2: | Protein |
| Validated Method: | Immunoprecipitation |
| Tissue: | COS7 cells |
| PMID: | 11157760 |
| Detail description: | We have identified a novel evolutionarily conserved snoRNA, called U85, which possesses the box elements of both classes of snoRNAs and associates with both fibrillarin and Gar1p. |
| The Predicated Binding Sites between SCARNA10 and GAR1 | |||||
| By miRanda | Structure | Match Score | Energy Score | SCARNA10 Location | GAR1 Location |
| The Predicated Binding Sites between SCARNA10 and GAR1 | ||||
| By RIsearch | Structure | SCARNA10 Location | GAR1 Location | Score |
| The Predicated Binding Sites of GAR1 | |
| RBPBD | |
| RsiteDB | |
| BindN |
>sp|Q9NY12|GAR1_HUMAN H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1 Sequence: MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK Prediction: ---++++++++++--+++++++++++++-+--++++++++-+++++++++++++++++++ Confidence: 725854598756922577657966898629225576876729655976659766977578 Sequence: GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL Prediction: -+-+++--+-------------------++--++--+-----+----------------- Confidence: 262754456999999995999999882654236763573759475335256297586979 Sequence: RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR Prediction: -------------+-++-++-++------------+---+++-+++++++++++++++++ Confidence: 278282938233372553775456286663864956564855289687988998898889 Sequence: GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH Prediction: +++++++++++++++++++++++++++++++++++-- Confidence: 9988989898765956956776659559688695932 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| BindN+ |
>sp|Q9NY12|GAR1_HUMAN H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1 Sequence: MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK Prediction: -+-+++++++++++++++++++++++++-++++++++++++++++++++++++++++-++ Confidence: 151864498758975688858864688618558888888859865987589866986176 Sequence: GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL Prediction: ------------------------------------+-+--------------------- Confidence: 223124366799986792777778992643484162724548196217332264153489 Sequence: RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR Prediction: -------+-----+-+-------------------++--+--++++++++++++++++++ Confidence: 245171848222535412155448265762342734342721558788977798998879 Sequence: GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH Prediction: +++++++++++++++++++++++++++++++++++++ Confidence: 9878986598877977987898769769888698966 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| RNAbindR |
>Q9NY12|GAR1 Sequence: MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK Prediction: +++++++++++++--------+++-++++++++++++++++++++++++++++++++++- Confidence: 688979888655633434344565465666778889899989999999898889888874 Sequence: GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL Prediction: ++---------------------------------++++-+-+----------------- Confidence: 663223000000000003000010000003001116767381511322102201320230 Sequence: RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR Prediction: ----------------+------------+-----+---++-++++++++++++++++++ Confidence: 320100040011132452301121101026132146313654757888999999999999 Sequence: GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH Prediction: +++++++++++++++++++++++++++++++++++++- Confidence: 99999999999999999999899999899999999890 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| Pprint |
Sequence: MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK Prediction: ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Confidence: 455579799999899999999657698989899999999979799999999999999986 Sequence: GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL Prediction: -+++-+--------------------+--------------------------------- Confidence: 353624232000000000010000003000000000201000000010000000200000 Sequence: RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR Prediction: -------+------+---+--------------------+++++++++++++++++++++ Confidence: 000000052102215202400000012000002010001966999999999999999999 Sequence: GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH Prediction: +++++++++++++++++++++++++++++++++++++ Confidence: 9999999999999999999999999799999997856 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest). |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.