Detail

Detail-Interactions:
RAID ID:	RPI00000060
RNA/Protein Symbol 1:	XIST(Xist)
RNA/Protein Category 1:	lncRNA
RNA/Protein Symbol 2:	HNRNPU(hnRNP U)
RNA/Protein Category 2:	Protein
Validated Method:
Tissue:
PMID:	21925379
Detail description:	Xist RNA and hnRNP U interact, and depletion of hnRNP U causes Xist to detach from the Xi and to localize diffusely in the nucleoplasm.

Detail-Interactions:

RAID ID:

RPI00000060

RNA/Protein Symbol 1:

XIST(Xist)

RNA/Protein Category 1:

lncRNA

RNA/Protein Symbol 2:

HNRNPU(hnRNP U)

RNA/Protein Category 2:

Protein

Validated Method:

Tissue:

PMID:

21925379

Detail description:

Xist RNA and hnRNP U interact, and depletion of hnRNP U causes Xist to detach from the Xi and to localize diffusely in the nucleoplasm.

>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6 Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: -++++-+-++-+--------++++-+++--+------------------+--------+- Confidence: 655653646675723823237658467645663676395768887453472422342455 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: -----++++++----------------------------------------------+-- Confidence: 443337569452255468643434456777887888367465565775844442242522 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: -----------------------------------+-+-+++-+++-++++++++++--- Confidence: 546767623432545355367687878885654434253465264527767877668223 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: ++++-+++++++-------+++-+++++++++++++++++++++++-+--++++++++++ Confidence: 744428896675558938655529857786668995766777796525325659877998 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: +++++++++++++-+---------++++++++++-------------------------- Confidence: 789987996856628526638674667969867526488887998899695325638482 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: --+-+-++-+-------------+-+++-++-+---------+---++-+---------+ Confidence: 626483642552765898948447488427746768793835464865743258686695 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: -----++----------------+--++++-+---------------------------- Confidence: 852365525567898763242236267656352452642777789839783853767474 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: +-+------------------+------------------++-+---------------- Confidence: 655252574767273266677558676999778996933354262256878955794486 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: ---+-+-++++++++--------------++++--+---+++-+-+-------------- Confidence: 644568268695465774999998842228666626374454272544432277859875 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: ---++--++-+-++---+--+----------++++---------+++-++++-------- Confidence: 562553466285574635744577399463476782548965376562577644746665 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: +-------+-+-++++++++-+---+----------+---------------------+- Confidence: 627746545442677867883542545757797727543638889999999942737254 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: ---------+-++++-+++++++++++++++++++++++-+++++++++++-+-+--+-+ Confidence: 363376342525676446658889999999999997998279686995956254922639 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: -++++++++++++++++++-++++++++-++-+-+------+++++++++++++++++++ Confidence: 255759999979959767825876796524725386333249599899997795666896 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: +++++-++++++++++++++++++--------++-+++---+--- Confidence: 688772959699979988885764322625254535552224522 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6 Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: --------+--+----------++--++-------------------------------- Confidence: 543647384164223625663234637425267594797999999999976988752657 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: ------------------------------------------------------------ Confidence: 877887876578799999999999999988867799699998999999999999999998 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: ------------------------------------------------------------ Confidence: 999879867886989999889999998988888886969878868896978889888986 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: --------------------------------------------------------+--- Confidence: 887967889999999999987986688757856457678987637876998842433253 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: ----++---------------------+-------------------------------- Confidence: 552234323387534855847874233334377699889998999777788749888491 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: ----+------------------+-++--++++--------------------------+ Confidence: 651542364688848778745365277226447427693965476713635768893867 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: -----------------------+--++-------+------------------------ Confidence: 611444464898587522222225137411435334342678688738564877889585 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: --++-----------------------------------+++------------------ Confidence: 224562252877674377999679796878348965814345521268575624561673 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: -----+--++++-+------------+--+-++-------+--+++-------------- Confidence: 553176216455142685989773524215155321142343343454354467647333 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: +---------+--------------------+++++--------++++++++-------- Confidence: 433222322165426854863674599341477883347665265573668621534443 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: +------------+-+--------------------+----------------------- Confidence: 627646541512132625117773556945375543542416388999979972857627 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: --------++---++--+--++++++++++++++++++++++++++++++-++-++++-+ Confidence: 672586324421166224225774779999999886887578798885961452643427 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: -+-++++++++++++++++++++++++++++++-+-+--+++++++++++++++++++++ Confidence: 232537988888877566765888866434445163422337446678666786345877 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: +++++-+++++++++++++++++-------+-++-++++++--++ Confidence: 686871778799978775445652223332314415546351245 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

>Q00839|HNRNPU Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: ---------+-+-+--++--+-++-+++-------------------------------- Confidence: 232212204847452265227475356812101100300000000000000000000000 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: ---------+---+---+------+-++-------------------------+-+-+-- Confidence: 012122222501352235211103525543200110000000000000002235452611 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: ----+---+----------+++++-+++-+-++--------------------------+ Confidence: 122363206121111241166655387647456114101000000001000000001119 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: ----------------+---++-+++--+--+---+----+-+--------------+-- Confidence: 144221104010211252345527564262463435414351542233002002201513 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: ++++++++-------------+--+-+----------+---------------------- Confidence: 667665664334201121212544736332400002062111001100000010001100 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: ------+--+--+-++---------++--+------------------------------ Confidence: 000102533533727524111142489436310011100000000000013200110011 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: ---------+--+-------++---------+++++++-++++-++++++++++++++++ Confidence: 200230344543510013027724310322499787773765746676788868775556 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: ++------+--++--+-------------------------------------------- Confidence: 674132038347743710110101422131231110201020010110000000000100 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: -------------+------+++++++++++++++-+++----+++++++--+-++++-+ Confidence: 100000011122154243246865687766655653555344487665654354577547 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: ++---++++-+++---++--+-++++++++----+++-+++---------+-+-----+- Confidence: 654446775366543356435266655555443355845564223333135463312452 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: ----------+++----------------------++--++++++- Confidence: 2432422232575411321121223331120211166336865650 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: --+++++++--+----------+++-+++--------------------++-----+--- Confidence: 335575335324223330102358526533001001000000001010154323204321 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: +-+-+++++++++--------+----------------------------+--+------ Confidence: 513156447554521110011400000000000000000000011001134224110110 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: -------------+-+-------------+--++-+++-+++-++++-+----+++++++ Confidence: 000000000011032412000000000003134626451435244732321323459664 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: +++--+-+++--------++++++++++++++++++++++++++++---+++-+-+++++ Confidence: 654334344332100002458648446686999998899999875632243534244887 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: ++++++++++-++++-+--------+-++++++-------------------+--++--- Confidence: 899998999634634350000001230445644310000000000000000031235123 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: --+-++--------------++++++++++++++-----------------+-+-++--+ Confidence: 224344111110000000014369566444767431102111022232322424234037 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: --+---++----------+++++++++++-++---------------------------+ Confidence: 326222430001000002437499987543640111200000000000002000110303 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: +-++++-----------------------------+------------------------ Confidence: 516545132200203000000110100000000003221110000001000000000000 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: ---+-+++++++++---------------+------+----+-+---------------- Confidence: 200305789977452000000101212023213103421234341200011100000000 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: ++-+---+----+++--+----+--------+++--------+-++-----------++- Confidence: 341420142331343234100231300100154431100302514622023100131440 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: --------+--+---+++++---------------------------------------- Confidence: 100000133024223644540101002010000000000000000000000000020110 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: ---------------+++++++++++++++++++++++++++++++++++++++++++++ Confidence: 000001000000132445356755789999898998999999999999999965946879 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: ++++++++++++++++++++++++++++++-----------+++++++++++++++++++ Confidence: 899999999889979999999999989634220030000126445669778675977753 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: +++++++++++++++++++++++++---+---++++--------- Confidence: 755799999899999786467857433141323437212111211 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest).

The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.

The Predicated Binding Sites between XIST and HNRNPU
By miRanda	Structure	Match Score	Energy Score	XIST Location	HNRNPU Location

The Predicated Binding Sites between XIST and HNRNPU
By RIsearch	Structure	XIST Location	HNRNPU Location	Score

The Predicated Binding Sites of HNRNPU
RBPBD
RsiteDB
BindN	>sp\|Q00839\|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6 Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: -++++-+-++-+--------++++-+++--+------------------+--------+- Confidence: 655653646675723823237658467645663676395768887453472422342455 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: -----++++++----------------------------------------------+-- Confidence: 443337569452255468643434456777887888367465565775844442242522 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: -----------------------------------+-+-+++-+++-++++++++++--- Confidence: 546767623432545355367687878885654434253465264527767877668223 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: ++++-+++++++-------+++-+++++++++++++++++++++++-+--++++++++++ Confidence: 744428896675558938655529857786668995766777796525325659877998 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: +++++++++++++-+---------++++++++++-------------------------- Confidence: 789987996856628526638674667969867526488887998899695325638482 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: --+-+-++-+-------------+-+++-++-+---------+---++-+---------+ Confidence: 626483642552765898948447488427746768793835464865743258686695 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: -----++----------------+--++++-+---------------------------- Confidence: 852365525567898763242236267656352452642777789839783853767474 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: +-+------------------+------------------++-+---------------- Confidence: 655252574767273266677558676999778996933354262256878955794486 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: ---+-+-++++++++--------------++++--+---+++-+-+-------------- Confidence: 644568268695465774999998842228666626374454272544432277859875 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: ---++--++-+-++---+--+----------++++---------+++-++++-------- Confidence: 562553466285574635744577399463476782548965376562577644746665 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: +-------+-+-++++++++-+---+----------+---------------------+- Confidence: 627746545442677867883542545757797727543638889999999942737254 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: ---------+-++++-+++++++++++++++++++++++-+++++++++++-+-+--+-+ Confidence: 363376342525676446658889999999999997998279686995956254922639 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: -++++++++++++++++++-++++++++-++-+-+------+++++++++++++++++++ Confidence: 255759999979959767825876796524725386333249599899997795666896 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: +++++-++++++++++++++++++--------++-+++---+--- Confidence: 688772959699979988885764322625254535552224522 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
BindN+	>sp\|Q00839\|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6 Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: --------+--+----------++--++-------------------------------- Confidence: 543647384164223625663234637425267594797999999999976988752657 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: ------------------------------------------------------------ Confidence: 877887876578799999999999999988867799699998999999999999999998 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: ------------------------------------------------------------ Confidence: 999879867886989999889999998988888886969878868896978889888986 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: --------------------------------------------------------+--- Confidence: 887967889999999999987986688757856457678987637876998842433253 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: ----++---------------------+-------------------------------- Confidence: 552234323387534855847874233334377699889998999777788749888491 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: ----+------------------+-++--++++--------------------------+ Confidence: 651542364688848778745365277226447427693965476713635768893867 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: -----------------------+--++-------+------------------------ Confidence: 611444464898587522222225137411435334342678688738564877889585 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: --++-----------------------------------+++------------------ Confidence: 224562252877674377999679796878348965814345521268575624561673 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: -----+--++++-+------------+--+-++-------+--+++-------------- Confidence: 553176216455142685989773524215155321142343343454354467647333 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: +---------+--------------------+++++--------++++++++-------- Confidence: 433222322165426854863674599341477883347665265573668621534443 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: +------------+-+--------------------+----------------------- Confidence: 627646541512132625117773556945375543542416388999979972857627 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: --------++---++--+--++++++++++++++++++++++++++++++-++-++++-+ Confidence: 672586324421166224225774779999999886887578798885961452643427 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: -+-++++++++++++++++++++++++++++++-+-+--+++++++++++++++++++++ Confidence: 232537988888877566765888866434445163422337446678666786345877 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: +++++-+++++++++++++++++-------+-++-++++++--++ Confidence: 686871778799978775445652223332314415546351245 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
RNAbindR	>Q00839\|HNRNPU Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: ---------+-+-+--++--+-++-+++-------------------------------- Confidence: 232212204847452265227475356812101100300000000000000000000000 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: ------------------------------------------------------------ Confidence: 000000000000000000000000000000000000000000000000000000000000 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: ---------+---+---+------+-++-------------------------+-+-+-- Confidence: 012122222501352235211103525543200110000000000000002235452611 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: ----+---+----------+++++-+++-+-++--------------------------+ Confidence: 122363206121111241166655387647456114101000000001000000001119 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: ----------------+---++-+++--+--+---+----+-+--------------+-- Confidence: 144221104010211252345527564262463435414351542233002002201513 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: ++++++++-------------+--+-+----------+---------------------- Confidence: 667665664334201121212544736332400002062111001100000010001100 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: ------+--+--+-++---------++--+------------------------------ Confidence: 000102533533727524111142489436310011100000000000013200110011 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: ---------+--+-------++---------+++++++-++++-++++++++++++++++ Confidence: 200230344543510013027724310322499787773765746676788868775556 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: ++------+--++--+-------------------------------------------- Confidence: 674132038347743710110101422131231110201020010110000000000100 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: -------------+------+++++++++++++++-+++----+++++++--+-++++-+ Confidence: 100000011122154243246865687766655653555344487665654354577547 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: ++---++++-+++---++--+-++++++++----+++-+++---------+-+-----+- Confidence: 654446775366543356435266655555443355845564223333135463312452 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: ----------+++----------------------++--++++++- Confidence: 2432422232575411321121223331120211166336865650 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
Pprint	Sequence: MSSSPVNVKKLKVSELKEELKKRRLSDKGLKAELMERLQAALDDEEAGGRPAMEPGNGSL Prediction: --+++++++--+----------+++-+++--------------------++-----+--- Confidence: 335575335324223330102358526533001001000000001010154323204321 Sequence: DLGGDSAGRSGAGLEQEAAAGGDEEEEEEEEEEEGISALDGDQMELGEENGAAGAADSGP Prediction: +-+-+++++++++--------+----------------------------+--+------ Confidence: 513156447554521110011400000000000000000000011001134224110110 Sequence: MEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAA Prediction: -------------+-+-------------+--++-+++-+++-++++-+----+++++++ Confidence: 000000000011032412000000000003134626451435244732321323459664 Sequence: KEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGKKKAEGGGGGGRPGAPAAGDGKTEQKGG Prediction: +++--+-+++--------++++++++++++++++++++++++++++---+++-+-+++++ Confidence: 654334344332100002458648446686999998899999875632243534244887 Sequence: DKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK Prediction: ++++++++++-++++-+--------+-++++++-------------------+--++--- Confidence: 899998999634634350000001230445644310000000000000000031235123 Sequence: ISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVR Prediction: --+-++--------------++++++++++++++-----------------+-+-++--+ Confidence: 224344111110000000014369566444767431102111022232322424234037 Sequence: IGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELS Prediction: --+---++----------+++++++++++-++---------------------------+ Confidence: 326222430001000002437499987543640111200000000000002000110303 Sequence: YAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVP Prediction: +-++++-----------------------------+------------------------ Confidence: 516545132200203000000110100000000003221110000001000000000000 Sequence: LEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVA Prediction: ---+-+++++++++---------------+------+----+-+---------------- Confidence: 200305789977452000000101212023213103421234341200011100000000 Sequence: GFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQ Prediction: ++-+---+----+++--+----+--------+++--------+-++-----------++- Confidence: 341420142331343234100231300100154431100302514622023100131440 Sequence: RKAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKE Prediction: --------+--+---+++++---------------------------------------- Confidence: 100000133024223644540101002010000000000000000000000000020110 Sequence: EAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFR Prediction: ---------------+++++++++++++++++++++++++++++++++++++++++++++ Confidence: 000001000000132445356755789999898998999999999999999965946879 Sequence: GGAPGNRGGYNRRGNMPQRGGGGGGSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRG Prediction: ++++++++++++++++++++++++++++++-----------+++++++++++++++++++ Confidence: 899999999889979999999999989634220030000126445669778675977753 Sequence: NYNQNFRGRGNNRGYKNQSQGYNQWQQGQFWGQKPWSQHYHQGYY Prediction: +++++++++++++++++++++++++---+---++++--------- Confidence: 755799999899999786467857433141323437212111211 *Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *Confidence: from level 0 (lowest) to level 9 (highest).

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