| Detail-Interactions: | |
| RAID ID: | RPI00000016 |
|---|---|
| RNA/Protein Symbol 1: | KCNQ1OT1(Kcnq1ot1) |
| RNA/Protein Category 1: | lncRNA |
| RNA/Protein Symbol 2: | DNMT1(Dnmt1) |
| RNA/Protein Category 2: | Protein |
| Validated Method: | RNA Immunoprecipitation |
| Tissue: | |
| PMID: | 20573698 |
| Detail description: | Kcnq1ot1 mediates transcriptional gene silencing by interacting with Dnmt1. Kcnq1ot1 recruits Dnmt1 to somatic DMRs by interacting with Dnmt1. |
| The Predicated Binding Sites between KCNQ1OT1 and DNMT1 | |||||
| By miRanda | Structure | Match Score | Energy Score | KCNQ1OT1 Location | DNMT1 Location |
| The Predicated Binding Sites between KCNQ1OT1 and DNMT1 | ||||
| By RIsearch | Structure | KCNQ1OT1 Location | DNMT1 Location | Score |
| The Predicated Binding Sites of DNMT1 | |
| RBPBD | |
| RsiteDB | |
| BindN |
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2 Sequence: MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQ Prediction: ---++++-+--+------------+++-++--+---------+----------------- Confidence: 536974629637776478374234755677435525352366474879989996548235 Sequence: LCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSEARRV Prediction: ------+-++-------+--+-++------------+-+-+--+-+--++++++++-++- Confidence: 854932766523526745557956484368375453555372454762648649782976 Sequence: GMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKP Prediction: -+-+-+++++++++++++++++++++-+-+++++++++++++++++-+++--++++++++ Confidence: 443446657975898999998979662725787779589997988655556596859996 Sequence: QEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEK Prediction: ++++++-+++++-+---+-+++++++++++++--+-------+++++++++++++-+--+ Confidence: 877768285554454326256578896868674674744223484998997687526335 Sequence: EEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPE Prediction: +++++++++++++++++-++---+--+---+---------+++++++++-++-+-+++++ Confidence: 547859897988878773753346349535554675664355588897726525378966 Sequence: EKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYL Prediction: +++--+-+-----------++++++++++++++++++-+-++-+++++++++-------- Confidence: 774325653362343324265588998899867477529566256697655657276339 Sequence: DDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLC Prediction: -----++-+------------------------+-----------+------+------- Confidence: 776475534344678897456246383785845435442575456562462848247474 Sequence: PIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFS Prediction: -----------------+-+-------------+-++----------------------- Confidence: 496247853797877246573637766373325537553386897958854542857673 Sequence: TSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGL Prediction: -+---------------------------+-------++++++---------++--++-- Confidence: 256955998853562769888878292744999687356765425479649555636524 Sequence: NLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQAR Prediction: +--+-------+-----------------------------+--------+-++++++++ Confidence: 552754854794595899869634744434554597925796799277667256997969 Sequence: RQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQ Prediction: +++-++++++++++++++++++---------------+--+--+-++-++++-------- Confidence: 967298779789958896867779369997999548354272442542767734454984 Sequence: QPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDNIPEMPSPKKMHQ Prediction: -----+-+--+---+--++++++++++-++--+--------------------+++++++ Confidence: 562338365456685426879797665357527466258789899798954526577689 Sequence: GKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVT Prediction: ++++++++++--------+++++++++++--------------------+++--+--+-- Confidence: 899999996863496476778799886768774854869668937755355732558693 Sequence: ALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPS Prediction: ------++-+------------+----++-----------------+-+++-+--++--- Confidence: 764642453446599888775644545544477999999989949247454855755432 Sequence: ENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLA Prediction: --------------------+---+---------+--+++++++++--+-+------+-- Confidence: 334865766775588653337226428758452475275576857642575677369654 Sequence: EMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPR Prediction: --+-+---+----------+--+++-+++----------+------------++++++++ Confidence: 265452735998797895256864545552473297478486658628272657859979 Sequence: KEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNK Prediction: ++----------+++++-+-+--+-------+--+-------+++++++++++-+-+--+ Confidence: 744657993542476562757424533325284469257664678979666656587727 Sequence: FYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGP Prediction: -+++++++++++-++---------------------+-+--------------------- Confidence: 446446778776265466878947799898999265566426548699788939322222 Sequence: NRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLR Prediction: -+-------+-++++-+----+-++++++++++++++++++++--------------+-+ Confidence: 257479792529685252222529898999999999999897623254553869264777 Sequence: TLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMA Prediction: -------------------------------------+-++--++--------------- Confidence: 254762644552357438573549699999988826586563365752698599949977 Sequence: GETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP Prediction: --++++++++++++------------+--+--++++++++++-+---------+--+++- Confidence: 625889958945556575897654225535336957887878352279647935445475 Sequence: RFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP Prediction: +-------+------+----+---+---+--+-----------+--++++++-------- Confidence: 579998795456372525666839668866655736888264242257588856567662 Sequence: GEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNG Prediction: --+-------------+--------------+---+-+++--++---+---------+-- Confidence: 535758779896878757529497988335442628558423875277436477448724 Sequence: ASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLP Prediction: -+-----+--+--+--++--++-+-+---+-------------+-+-------+--+--- Confidence: 353638353352242555378534253784778839838665678748566334446585 Sequence: NIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCL Prediction: ----+----++-++-+++++++++++++++--+---------+------+---------- Confidence: 293958244543874878856999998895348476348585664225563622897589 Sequence: PHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFP Prediction: --+++++--------+---------+--+---+-+--+-------+----+---+++-++ Confidence: 625568522254625797577872357243225262475424444548276233855364 Sequence: DTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAKARESASAKIKEEEAAKD Prediction: ---+---------+---+-------+------------+-+++-+++-+------- Confidence: 43358673666256353567435676776779398677567562647655536627 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| BindN+ |
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2 |
| RNAbindR |
>P26358|DNMT1 Sequence: MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQ Prediction: ++-+--------------------+----------------------------------- Confidence: 564841002000001101114342644021012212431130022031001000010031 Sequence: LCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSEARRV Prediction: -------------+-+++-++---------------------------+----------- Confidence: 010010001411053767368123202311200200000011011313512211000000 Sequence: GMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKP Prediction: -------------+-+++++-+-+---+---------------------------+---- Confidence: 000000010312264575864626221610200110011222312100000021353440 Sequence: QEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEK Prediction: ------------------------------------------------------------ Confidence: 110031010100000000110012222332232021111021110100000000000000 Sequence: EEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPE Prediction: ---------------++------++-++----------------+-+++-++++++++-- Confidence: 000000010000324653414347636531100000000000015355747766655523 Sequence: EKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYL Prediction: -----------------------------------+-----+------------------ Confidence: 102000000000000000020122021121211145212245124242311411210100 Sequence: DDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLC Prediction: ---------------------------------------------+---------+-+-- Confidence: 000000000000000000000000000000000000000001012513414031163501 Sequence: PIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFS Prediction: ------------------------------------------------------------ Confidence: 100000000000000130021000000001000001211411220010000002000113 Sequence: TSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGL Prediction: --------------------------+--+------------------------------ Confidence: 411000001234214121221023227205200110113130000100020010000020 Sequence: NLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQAR Prediction: -------------------------------------+++-+++++++++++++++++++ Confidence: 102000000001101110100100000000000201268627758989999999999999 Sequence: RQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQ Prediction: ++++++++--++++++++++++--++---------------------------------- Confidence: 879797772257678896656741750110000010000000000000012011011010 Sequence: QPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDNIPEMPSPKKMHQ Prediction: --------------------------------------------------------+-++ Confidence: 100000011001001101312010000000000000000000000000000000046367 Sequence: GKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVT Prediction: ++++++++++-++----------++-+++----------+-------------------- Confidence: 797897865535500100202348646763402211130630100010001001200200 Sequence: ALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPS Prediction: ------+-----+-++--+-------------------------------------+-++ Confidence: 101213744433719633613323013003422000110100000300121022335266 Sequence: ENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLA Prediction: +++----------------------+---------------------------------- Confidence: 667342021000000000313424360111013111000000000000012231341221 Sequence: EMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPR Prediction: -------------------+---------------+------------------------ Confidence: 011001003000000002351041101032012305412310210000000000001101 Sequence: KEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNK Prediction: --------------------+----+--------------------------------++ Confidence: 000000000002122010215044262432341131421210143313211230214078 Sequence: FYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGP Prediction: -++----++------+-++++----------------++--------------------- Confidence: 255243465233142625597234422100211242269442420310111000111021 Sequence: NRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLR Prediction: ------------------------------------------------------------ Confidence: 330200102101300000011311211113112442312120000010000000003312 Sequence: TLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMA Prediction: ---------+--++-----------------+----++-+-------------------- Confidence: 002010342644562243301322233112153024562744232020240311000000 Sequence: GETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP Prediction: ----------------------++++++++--++-+++--++-+++-------------- Confidence: 000000001011010000000467999688448737661265485732230010011013 Sequence: RFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP Prediction: -----+++++--+++++----------------------+++++++++++++-------- Confidence: 424416657634756863113100120121423030422757677689888823111113 Sequence: GEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNG Prediction: ---------+-------------------------------------------------- Confidence: 101002332534000121111210100110000011100211321301311133210010 Sequence: ASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLP Prediction: ---------++-++++++--++--------+++-+-------------+-++++-++--- Confidence: 000000012554686668325712101134877474233113132313545975356111 Sequence: NIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCL Prediction: ----+--------------------+--+-------------+------+---------- Confidence: 111151331211110020011223373474424221141343832222053021211120 Sequence: PHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFP Prediction: ------++++++++++++++++-++--++-+-+-++-+--++-+++--+-+++++++++- Confidence: 022334767889688968886627732573536466162166458643737856959873 Sequence: DTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAKARESASAKIKEEEAAKD Prediction: -+-+---+-++-+++++++++++-++------------------------------- Confidence: 453523353582669789999983774114210211012010101000000000010 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| Pprint |
Sequence: MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQ Prediction: -+++------------------+-++--------------------------------+- Confidence: 334521111021100001101042652020122110000020002020002121210141 Sequence: LCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSEARRV Prediction: -----------------------++--+------+-----++++++++++-+-----+-- Confidence: 000000003000100020003024611400202241120155656844453423210421 Sequence: GMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKP Prediction: -+---++++++++++++++++++++++++-+++-+++-+++-+------+++++++++++ Confidence: 243224454799999999899959765553335158325442421230147599989997 Sequence: QEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEK Prediction: ++++++++++++---------+-+-+---+++-+---+-------+----------++++ Confidence: 845756474647210100010325362205462422151212020522320000135335 Sequence: EEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPE Prediction: ++++++++-----++++++-++++-------------+--++-++---++++++++++++ Confidence: 667755461231335365535433200000000000040046246332758798658584 Sequence: EKEPEKVNPQISDEKDEDEKEEKRRKTTPKEPTEKKMARAKTVMNSKTHPPKCIQCGQYL Prediction: ++------------+----++-+++++++++++++++-+-++++-++-+--++------- Confidence: 331101200011004013134379988856677444434374543452431340000000 Sequence: DDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLC Prediction: ----------------------------------------------------+------- Confidence: 000112100100110000000000000000002000000000001200000241022133 Sequence: PIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFS Prediction: +----+-----------------------+-----+++++--------+----------- Confidence: 423234001000000000000020003115322216354612000001411002000002 Sequence: TSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGL Prediction: ---------------------------------+-------------------------- Confidence: 320000000000000000000000210000000400031100000000000000003102 Sequence: NLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQAR Prediction: -----------+-----------------------------+-------+++++++++++ Confidence: 200320032005100000000100000000000000000103000001233787995447 Sequence: RQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQ Prediction: +++++++++--++++++----------------------------++++++++++----- Confidence: 846456644124533553310100000000000010001101332547898886320010 Sequence: QPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDNIPEMPSPKKMHQ Prediction: -----++---+---+-+++++++++++++++-++---------------------+++++ Confidence: 000004523151213268679997765887436530200000000000000012147698 Sequence: GKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVT Prediction: +++++++++++-------------+-------------------------+--------- Confidence: 999999796740000000001002332010000000000000000000003000000000 Sequence: ALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPS Prediction: -------------------------------------------------+--+---+-++ Confidence: 000001100301203200000010000000000000000000020010352040103165 Sequence: ENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLA Prediction: --+--------------------------------------------+++-+++-+-+-- Confidence: 324001201012000000001000000000002000000000110003342345232531 Sequence: EMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPR Prediction: ----++--+-----------+++---++-+--------------------+-+++++++- Confidence: 302054015210100000124352114515100200010000000000004144544652 Sequence: KEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNK Prediction: +-----------------+-+++----++-++--+--+++++++++-+--+-+-+-+-++ Confidence: 420000000002011213533543221432440040334736774534314251415067 Sequence: FYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGP Prediction: -++++++++-++++------------------------+--------------------- Confidence: 369655653234333110000000000000000000214000121001001000200201 Sequence: NRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLR Prediction: -----------------------++++++++++++++++++-+-----------+----- Confidence: 000000100000110001001338789999999999999782600010013000300122 Sequence: TLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMA Prediction: --+-+++++--++--------------+------------+------------------- Confidence: 006096554128402010000030001600000000330162100000102110200020 Sequence: GETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP Prediction: -----------------------++---+----+--++++-+-+----++---------- Confidence: 120001000101222000000004421030223513976824061132330000000020 Sequence: RFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP Prediction: -----+++++++-++-++----------------------++++++-+++++--+---++ Confidence: 000003949975076355001000000000010000000134599528498600400363 Sequence: GEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNG Prediction: ---------------------------------------+---------------+--+- Confidence: 210000000000110212120310001120011001101421320102101011140240 Sequence: ASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLP Prediction: --------------------+-++-----+--+-+--++---++-++-+++++++-+-+- Confidence: 021020000000000023323234322223334043253322452643445644433332 Sequence: NIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCL Prediction: ---------------+----+---++-++---+---+-----+----+-+++---+-+-- Confidence: 210220013011100332234222353432213322421123322224254433243533 Sequence: PHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFP Prediction: ++---+-+++++++++--+---------------------++++-++-+-+--------- Confidence: 443323356655644523320000010021112022222136633431603200000000 Sequence: DTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAKARESASAKIKEEEAAKD Prediction: ----------++-++-+-+----------+--------+--+-++----------+ Confidence: 01000000304519425243110000212500302212513434402030101134 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest). |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.