Detail

Detail-Interactions:
RAID ID:	RPI00000007
RNA/Protein Symbol 1:	XIST
RNA/Protein Category 1:	lncRNA
RNA/Protein Symbol 2:	BRCA1
RNA/Protein Category 2:	Protein
Validated Method:	RNP Immunoprecipitation
Tissue:
PMID:	15065664
Detail description:	Chromatin immunoprecipitation experiments have demonstrated that BRCA1 physically associates with XIST RNA.

Detail-Interactions:

RAID ID:

RPI00000007

RNA/Protein Symbol 1:

XIST

RNA/Protein Category 1:

lncRNA

RNA/Protein Symbol 2:

BRCA1

RNA/Protein Category 2:

Protein

Validated Method:

RNP Immunoprecipitation

Tissue:

PMID:

15065664

Detail description:

Chromatin immunoprecipitation experiments have demonstrated that BRCA1 physically associates with XIST RNA.

>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1 PE=1 SV=2 Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: ------+-----------------------------++----------------++++++ Confidence: 988368585595799598539979899989937452558729896999937732886777 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: -+--+---++++-+++-+----------------------+-+-++--+++++++----- Confidence: 355552245765276527633998999499898697257464525622865676523528 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: ------++-++++-++--+++--+-+----+-+---++--+-+++++++++++++++-+- Confidence: 994792563698937833544424356223466627455274975869795754856756 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ---+-++--+--+-++-------------+-++------+-++----------+++-+++ Confidence: 465535423643535562688678849227277344254558654428353275653466 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: -++++-+++++++-++++-++++++-++-------++++-++-++-+++---++-+-+-- Confidence: 245453755679526875285665555574833337766376354344544345453564 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: +----++-+++++-+++++++-+++-+++-+++++++++----------++++++-+-+- Confidence: 574446628587429685596356728772888986577645387455455557736442 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: +++-+-----------++--+------+---------++-++++++-------------- Confidence: 665274447775938345526645462567346544455346746462887999997998 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: ----++-+--------------+-+++++++-+++-------++++++-+---------- Confidence: 642365347467726756777552595878635758763852768998362448349588 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: ------------------+++++++++++++------------------------+++++ Confidence: 999797927857957234779699999897563667792496436323444523267655 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: +--------++++++++++++++-+++-+---+----+--+++--+-+-+---------- Confidence: 525367293564878979578572474342624442354264752657246227786948 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: -+++++++++++++++++----------++-++---+-------+++++++++++++-+- Confidence: 357968999979998787264896898344565435537275245566759878668355 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: ++-+-------+--++++++++++++++++++++--------++-+-+-++--++---+- Confidence: 642736255474434875999999989889877633555928444536258324523855 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: -------+--+--+--+-+--+-------------+-----++--+-+------+-+++- Confidence: 894434282353446457672524256378573875433547642825624644526572 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: ---------+-+++++++++--+--------+---+--++++++-++--+---------- Confidence: 437468693636949864764553786554547445426958952664452577446324 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: +-+------------------+-+++++-----+--+--------+-+++++++++++-- Confidence: 644273555358574372324727775525342433454555824547769599876752 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: --------++++++++-+---+--------------+-----+-+-++-++---+++-+- Confidence: 436422227766556566272572727775544324625426746385369234546582 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: --+---+-----------+-----------+++-++---------------+-------- Confidence: 225343522234442342684567692235678378277487986633242634525352 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: ---++-+++--+-------++++-++--+++++--+---+--+---+------++++++- Confidence: 223674588257258624565546564266667335262563423356362339595684 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+---------+-+-++++-++++-++-----------+----------------+- Confidence: 645958777343725344556747556486343679935835363438936686354462 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +-++-----------------------------+---+++--+++-++++++-------+ Confidence: 557644244778999995735632582348253544358562857389677732334527 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: -++++-++-+++--+--------------------+-+++++++++--++---+------ Confidence: 369962893655225423475588997899782926277886947676544427225436 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ---+-------------+-+---------+-+-+--+-+---------++++-------+ Confidence: 828522523524578675543423546436443555424834966624656534556656 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: ++++++++++----------------+----+------+-------+--+---++-+--- Confidence: 796696554523425362487245437523342223345353226356562226424523 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: -----+++++--+++++++-----------------------+++++++----------- Confidence: 632325555443565475453357829447786989897523676775522484532652 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: --+--+++++-+---+++++++++--------+--+---+--++++++++++--++++++ Confidence: 476326686538245657866565523322345655756452789897765633858589 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: --+----------++++++++++---------------------------++--+----- Confidence: 326346253432564847687752366893998967548433544353335752833434 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: -----+----------+--+--+--++-+--+-+++++--+----+--+--+++---+-+ Confidence: 343824772754445343242473254495273676773565328576424554324425 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: ++--+-------++-+---+-++++-+++-+------------------+---------- Confidence: 463362555534463622343646926645538524736888999524772325383288 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: ------------------------------+----------+-+-++---------+--- Confidence: 366444566356856888337238987756538744969225564555746877695864 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: -+-++++++++-++++-++--+----------++------------------+------- Confidence: 374858988892976448565679697838465553255978997997636754622427 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: -+---------------------------------------------------------- Confidence: 455846999956563466476598968778477328689869784484595359964943 Sequence: SHY Prediction: --- Confidence: 332 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1 PE=1 SV=2 Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: --------------------------------------+-++--+---------+----- Confidence: 758378898996999589999989662465879887725264533449757843316213 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: -+--+-----+------+------------------------------------------ Confidence: 232352372333523216534897799698786587599769663153134136676756 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: ----------+-+-++-++-----------------------+++++++--+--+----- Confidence: 788993412241354534632563639777478649227522456877712423422858 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ------------------------------------------------------------ Confidence: 897455647786785487789899989983955898687476589888757696456324 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: ----------++---++----+----------------+-++-++----------+---- Confidence: 422567342135444642312433162386877471336154445222176435353243 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: +---++++++++--+++++++-----+---+++++---+----------++-+++----- Confidence: 364134666666339454474722234325463671333685167453443235342452 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: --+-+--+-----+-+++-++-+-+-++----------+-++---+-------------- Confidence: 224375234531542667246244434426456673216334121578888996855753 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: --++++-+--------+--------++++++--++---+-+++++++++++-+--+---- Confidence: 316735153477436234734432284748522549316347898989456282155634 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: ---------------+--+++++++++++++-+-----++-----++--+++-------- Confidence: 759476745435717312779899999768435522265472325361244312221244 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: ------+--++-+++---+-+-+--++-+------+-+--+++--+-+++-++-----+- Confidence: 226254372761536421434351654453541774333265522837561674445744 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: +++++++++++++++++++-+-------++++++--------+-+++---+-+++-++++ Confidence: 358968999979999768544372444466366523234476424541434157516454 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: +++++-+-----------+++++++-++-++--+------+--+---------+++--+- Confidence: 997973557698854122788745616325613313317667446153732214441645 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: ----+-------------+-+++-+----------+--+--+---+-------------- Confidence: 371465226558526616345543444146362565244355264525669979551852 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: -----------++-++++++--+----------------++-++-----+-------++- Confidence: 223357363137718844641443795863717452431831542212453342335545 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: +----------------++--+++++++-----+-------------+++++++++++-- Confidence: 543368678367743166413839887415344521265154744235436486654333 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: --------+++++-++-++-+---------------------+---++-++++++++-+- Confidence: 743532125554523326466261525274368537124424633345438455343455 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: +-------------++-++--+-++-+++-+++++++--------------+---+++-+ Confidence: 332454272113254424342337647872775464563443786324222624353844 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: ++-++-++++-+-+-----++---------------------++-++-+----+++-+++ Confidence: 444343476635246515443126256523234641242142561355472248582674 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+----+-----------+-++-+-++----------+-----------------++ Confidence: 735756224652622627442424413357333467825451441337635265336575 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +-++-----------------------+--+-++---+++--+-+-+++++++-+----+ Confidence: 865553233548764885421111472346325733336451533189767435331558 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: -++++-++--+---------------------+-++-++++++-+---+---++------ Confidence: 257952774243575976798875875666654645344445724166342533247745 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ---------------------------------+---++--------------------+ Confidence: 958244713555788882422743545743523444135627979977333446767554 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: ++++-------------+---+-------------------------------------- Confidence: 474312378989947354365445874868885425874667448458826763554532 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: -------+----+-+-------------------------+--+-++------------- Confidence: 342622333774343217662757517679899999898343142433335776454674 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: --------------------------++------------------+----+--+-+--- Confidence: 772683265673999372443543225443352953968698541263342473724621 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: --------------++---+---------------------------------------- Confidence: 743545323323324462354422558896898868339442732577866595253747 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: -------------------------------+-++++----------------------- Confidence: 545833785877797734333629654827436353336748677278234131414335 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: ---------------------++++-++-------------------------------- Confidence: 443343665743135275532343623426448824416573799445932448287499 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: ------------------+----------------------------------------- Confidence: 786722424325654877416125837713213414818693828246938886992865 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: ---++++++++-+-+------+----------+-------------------+------- Confidence: 216756555672815352172479586964355213363997996743426454724639 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: -----------------------------------------------------------+ Confidence: 878969987511333578397455712435346128489845594585785657853726 Sequence: SHY Prediction: +++ Confidence: 467 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

>P38398|BRCA1 Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: ---------------+---------------------+--+--++-------++++++++ Confidence: 110100302101401710341024212111011312362372465231140166678668 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: ++-++++---+--+-+++--+---------------------+------+--+------- Confidence: 873668534474082657326001100100200101131200512322352354334033 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: ------+++++++-++--+----+-------------+-+--+++++++++++++++-+- Confidence: 214214668999838833523427231311201040262634987777876878977261 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ------------------------------------------------------------ Confidence: 301101211000000111010100000123201111103113210110001000000022 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: ------------------------------------------------------------ Confidence: 012240101034011221210211000000021121014000111120300000100000 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: ------++++--+-++---++--+--+++-++-+++--------+--------------- Confidence: 102013556744527544378236446762892655133101416423123003111313 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: --+-+--+-----+++++-++---+-+--------------------------------- Confidence: 415452352112366687366334526424100110324334313401010000001003 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: -------------------------+-++++--++++++-++++++++++++++++---- Confidence: 331221111111032122121124274679834886888479999999899895862003 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: -------------++++++++++++++++++++++++-++---+-++++-+-+------- Confidence: 000010010233487975799699789899989778635612254578648474224422 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: -+++--+--++++-+-------------+------+--+++-+-++-+++-++-----+- Confidence: 355713523787847232321024044363142116245664546635863781222183 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: +++++++++++++++++++++------++++++++------+++-++---+---++++++ Confidence: 878869999999999989957413122679798764131325564653215244568775 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: +++++-+-----------++-++-----++++-+------+---------+-++------ Confidence: 997983732332412343854564323265762741332061121102027277344021 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: --+++--+------------++--+----------+--+--------------------+ Confidence: 016574462110140121325533620220014345445324300201000000011115 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: -----------++-+++++++-++-------+--------+-++--+---+--++--++- Confidence: 212400014337849887889365411113252103133452572264146415820571 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: +---------+--++------+--+-+++-+++++++++--------+--++++++++++ Confidence: 521101110251157304301512545564667977755222231446245577885777 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: ++--+---++-+--+--++-+-++----------+-+-++--+---+---+-++++++++ Confidence: 674454337646426428737356431412112252845532530062247486678676 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: +---------+------+--++-++-+++-++-+++-----+---+-----------+-+ Confidence: 724300012473224417337629827953861575433215112511321101022705 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: +--++++++++++++-+----+----------------+---+++++-+-+--+++-++- Confidence: 531665577768556274142631240020011002015413868874715327763952 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+-----------+-+-+--++---+-----------------+-----------++ Confidence: 744263141223014373627447532362311110010032424372011301331155 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +-++--+++--------------+----+-+-++-+++++-++++-+++++++++++-++ Confidence: 637514566434100000010315302361647535656647557299969966887358 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: +++++-++----------------------------------+----------------- Confidence: 675863851110000000000001101200111012010203631210111202211020 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ------------------------------------------------------------ Confidence: 123214202000000001001000000001100211112000000000300110000001 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: ------------------------------------------------------------ Confidence: 132000000000000001100000000000000001000000010000000000000000 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: --------------+--------------------------------------------- Confidence: 000310010100125340211220040030000000000120021212100000101001 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: ----------------------++--+---------------------------+----- Confidence: 000000012001000112242257327422301001000001111002001101632343 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: ------+-+-+-++++-+++++++------------------------------------ Confidence: 321112525063556828775576213000000000000020101000010001011010 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: ----------------------------+-----------+------------------- Confidence: 211000001000000011001110200250121442331250120200010101111401 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: --+--------------+------+--++------+------------------------ Confidence: 426431210000130245032323512650311045122310000222122330102310 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: ------------------+--------++++--------------+-------------- Confidence: 041121011021122203521423124666721144120043141540021311203133 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: -+-++++++++++-++--+--+-----------+---------------+--------+- Confidence: 184989989798845824712520313213434531221011004111150021031151 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: ----------------------------------+------------------------+ Confidence: 241040000042203111211200021011411162310021104421000010024047 Sequence: SHY Prediction: -++- Confidence: 2770 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest).

Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: ----------------------------------------++----------++++++++ Confidence: 233130100003213100010000100000000000202054112020020144765775 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: ++--+----++---+-----+-----------------------+++++++++++-++-- Confidence: 642240210451324323104000000000000001000011235585786796538320 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: -------++++++-++++++++-+---------------+-++-+++++++-+++++-+- Confidence: 000003357955826965557334110000231100312334304758764234653030 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ---------------+----------------+-+----+--+----------++-+-++ Confidence: 100003020001210523110010001101213132223433501000200114424343 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: ++++++++--++--+++--+-++++-----------+-+--------------------- Confidence: 454654443347223453252444411312011303524122111001000001221001 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: ------+-++-++-+-++++++++++++--++-++-+------------+------+-+- Confidence: 221201435436624045365388845413452433323000100020141000024142 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: --------------------+-++-+-+-------+-++++++-+--------------- Confidence: 123110000000100112013143331600000034345445334200110000010000 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: --+-----------+----------+---+-+--------+-+++++++++-+--+---- Confidence: 004333210000003110000020062314340220003043656655444353040000 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: ----------------+++++-+++++++-----------------++------------ Confidence: 000000002000020244456058878452322001000100122363102011120200 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: -------++-++---+--+++-++-+--++------------+---++++--+------- Confidence: 001301235174221322343144343144312011100122402045551240032023 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: ++++++++++++++++++++-----------+++---------++++++---+++++++- Confidence: 557989898969899847463300000131146503000000054563521246547343 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: ++-++------++--++-++++++++++-++-------------------+---+-+-++ Confidence: 442630002203322452675498768523533122010000000000013223534233 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: +-+++-+-------++--++-++-----------+++++--++-------------+--- Confidence: 324440312220013402532442232320002245444135310001000001003001 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: -----------++-++-++++---------------++-+++++---+------+----- Confidence: 100000003224437433654210000002131103351777652333031202311212 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: ---+---------------------+-------+---------------++-+-+----+ Confidence: 210310000000000002110000243120001532230231000223244333431305 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: -----++++++++++--++---------------------+-+-+++++++++-+++++- Confidence: 120235346776554213412003131100000001101252425677544442546443 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: +-+--------+------+-------+----------+-----------+---------+ Confidence: 424321101214113122412020005220302220030002000223342220021213 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: ---+-----+++++++++++--------------+-+-+-----------++-+++++++ Confidence: 032323133565463444331122211122232233424310200330236436696565 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+---------------++--+-+-+---------------------------+--- Confidence: 610141200100101001015523324132120111100000000000000100003012 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +--------------------+-----------------+---+--+++++++-----++ Confidence: 513301010000000000100321201030000011132421343245445643212257 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: ++++++++++++-------------------++-++++++--+-------+---+----- Confidence: 799976774445112000000000000001035036555423421221024302420021 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ----++--+--------------------------------------------------+ Confidence: 020045124010001001001120002113120010011100010110012000011214 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: +++--+------------------------------------------------------ Confidence: 434313331302000000000000000001100000000000011000010000100101 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: -------------------------------------------++++------------- Confidence: 100102121210001010110100010000000000000120134343301100000000 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: ------------------++-----------------------+++++--++-+++++++ Confidence: 000000110021012102342113303300220000000003265453324323535555 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: ++--+-----++++++-++++++------------------------------------- Confidence: 453031322145657404334451011000010010100001112201000301100000 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: ------------------+---+---------+++------------------+------ Confidence: 000000000000000311412040321130314452320000000200111323311211 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: -------------------+++++++-+++-+---------------------------- Confidence: 021132320121000211035445443675343001211000000021132000201000 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: -------------------------++--------------------------------- Confidence: 000010000200000000000000144010320030010033220320000000000013 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: -++++++++++++++++-++-+-------------------------------------- Confidence: 288999999999944743543520000010120001000011001010000000000000 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: ++------------------+--------------------------------------+ Confidence: 350100000000000000004010000000000100000000000102000000001014 Sequence: SHY Prediction: --- Confidence: 123 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest).

The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.

The Predicated Binding Sites between XIST and BRCA1
By miRanda	Structure	Match Score	Energy Score	XIST Location	BRCA1 Location

The Predicated Binding Sites between XIST and BRCA1
By RIsearch	Structure	XIST Location	BRCA1 Location	Score

The Predicated Binding Sites of BRCA1
RBPBD
RsiteDB
BindN	>sp\|P38398\|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1 PE=1 SV=2 Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: ------+-----------------------------++----------------++++++ Confidence: 988368585595799598539979899989937452558729896999937732886777 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: -+--+---++++-+++-+----------------------+-+-++--+++++++----- Confidence: 355552245765276527633998999499898697257464525622865676523528 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: ------++-++++-++--+++--+-+----+-+---++--+-+++++++++++++++-+- Confidence: 994792563698937833544424356223466627455274975869795754856756 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ---+-++--+--+-++-------------+-++------+-++----------+++-+++ Confidence: 465535423643535562688678849227277344254558654428353275653466 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: -++++-+++++++-++++-++++++-++-------++++-++-++-+++---++-+-+-- Confidence: 245453755679526875285665555574833337766376354344544345453564 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: +----++-+++++-+++++++-+++-+++-+++++++++----------++++++-+-+- Confidence: 574446628587429685596356728772888986577645387455455557736442 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: +++-+-----------++--+------+---------++-++++++-------------- Confidence: 665274447775938345526645462567346544455346746462887999997998 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: ----++-+--------------+-+++++++-+++-------++++++-+---------- Confidence: 642365347467726756777552595878635758763852768998362448349588 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: ------------------+++++++++++++------------------------+++++ Confidence: 999797927857957234779699999897563667792496436323444523267655 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: +--------++++++++++++++-+++-+---+----+--+++--+-+-+---------- Confidence: 525367293564878979578572474342624442354264752657246227786948 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: -+++++++++++++++++----------++-++---+-------+++++++++++++-+- Confidence: 357968999979998787264896898344565435537275245566759878668355 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: ++-+-------+--++++++++++++++++++++--------++-+-+-++--++---+- Confidence: 642736255474434875999999989889877633555928444536258324523855 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: -------+--+--+--+-+--+-------------+-----++--+-+------+-+++- Confidence: 894434282353446457672524256378573875433547642825624644526572 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: ---------+-+++++++++--+--------+---+--++++++-++--+---------- Confidence: 437468693636949864764553786554547445426958952664452577446324 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: +-+------------------+-+++++-----+--+--------+-+++++++++++-- Confidence: 644273555358574372324727775525342433454555824547769599876752 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: --------++++++++-+---+--------------+-----+-+-++-++---+++-+- Confidence: 436422227766556566272572727775544324625426746385369234546582 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: --+---+-----------+-----------+++-++---------------+-------- Confidence: 225343522234442342684567692235678378277487986633242634525352 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: ---++-+++--+-------++++-++--+++++--+---+--+---+------++++++- Confidence: 223674588257258624565546564266667335262563423356362339595684 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+---------+-+-++++-++++-++-----------+----------------+- Confidence: 645958777343725344556747556486343679935835363438936686354462 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +-++-----------------------------+---+++--+++-++++++-------+ Confidence: 557644244778999995735632582348253544358562857389677732334527 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: -++++-++-+++--+--------------------+-+++++++++--++---+------ Confidence: 369962893655225423475588997899782926277886947676544427225436 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ---+-------------+-+---------+-+-+--+-+---------++++-------+ Confidence: 828522523524578675543423546436443555424834966624656534556656 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: ++++++++++----------------+----+------+-------+--+---++-+--- Confidence: 796696554523425362487245437523342223345353226356562226424523 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: -----+++++--+++++++-----------------------+++++++----------- Confidence: 632325555443565475453357829447786989897523676775522484532652 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: --+--+++++-+---+++++++++--------+--+---+--++++++++++--++++++ Confidence: 476326686538245657866565523322345655756452789897765633858589 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: --+----------++++++++++---------------------------++--+----- Confidence: 326346253432564847687752366893998967548433544353335752833434 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: -----+----------+--+--+--++-+--+-+++++--+----+--+--+++---+-+ Confidence: 343824772754445343242473254495273676773565328576424554324425 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: ++--+-------++-+---+-++++-+++-+------------------+---------- Confidence: 463362555534463622343646926645538524736888999524772325383288 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: ------------------------------+----------+-+-++---------+--- Confidence: 366444566356856888337238987756538744969225564555746877695864 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: -+-++++++++-++++-++--+----------++------------------+------- Confidence: 374858988892976448565679697838465553255978997997636754622427 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: -+---------------------------------------------------------- Confidence: 455846999956563466476598968778477328689869784484595359964943 Sequence: SHY Prediction: --- Confidence: 332 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
BindN+	>sp\|P38398\|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1 PE=1 SV=2 Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: --------------------------------------+-++--+---------+----- Confidence: 758378898996999589999989662465879887725264533449757843316213 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: -+--+-----+------+------------------------------------------ Confidence: 232352372333523216534897799698786587599769663153134136676756 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: ----------+-+-++-++-----------------------+++++++--+--+----- Confidence: 788993412241354534632563639777478649227522456877712423422858 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ------------------------------------------------------------ Confidence: 897455647786785487789899989983955898687476589888757696456324 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: ----------++---++----+----------------+-++-++----------+---- Confidence: 422567342135444642312433162386877471336154445222176435353243 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: +---++++++++--+++++++-----+---+++++---+----------++-+++----- Confidence: 364134666666339454474722234325463671333685167453443235342452 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: --+-+--+-----+-+++-++-+-+-++----------+-++---+-------------- Confidence: 224375234531542667246244434426456673216334121578888996855753 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: --++++-+--------+--------++++++--++---+-+++++++++++-+--+---- Confidence: 316735153477436234734432284748522549316347898989456282155634 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: ---------------+--+++++++++++++-+-----++-----++--+++-------- Confidence: 759476745435717312779899999768435522265472325361244312221244 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: ------+--++-+++---+-+-+--++-+------+-+--+++--+-+++-++-----+- Confidence: 226254372761536421434351654453541774333265522837561674445744 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: +++++++++++++++++++-+-------++++++--------+-+++---+-+++-++++ Confidence: 358968999979999768544372444466366523234476424541434157516454 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: +++++-+-----------+++++++-++-++--+------+--+---------+++--+- Confidence: 997973557698854122788745616325613313317667446153732214441645 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: ----+-------------+-+++-+----------+--+--+---+-------------- Confidence: 371465226558526616345543444146362565244355264525669979551852 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: -----------++-++++++--+----------------++-++-----+-------++- Confidence: 223357363137718844641443795863717452431831542212453342335545 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: +----------------++--+++++++-----+-------------+++++++++++-- Confidence: 543368678367743166413839887415344521265154744235436486654333 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: --------+++++-++-++-+---------------------+---++-++++++++-+- Confidence: 743532125554523326466261525274368537124424633345438455343455 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: +-------------++-++--+-++-+++-+++++++--------------+---+++-+ Confidence: 332454272113254424342337647872775464563443786324222624353844 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: ++-++-++++-+-+-----++---------------------++-++-+----+++-+++ Confidence: 444343476635246515443126256523234641242142561355472248582674 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+----+-----------+-++-+-++----------+-----------------++ Confidence: 735756224652622627442424413357333467825451441337635265336575 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +-++-----------------------+--+-++---+++--+-+-+++++++-+----+ Confidence: 865553233548764885421111472346325733336451533189767435331558 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: -++++-++--+---------------------+-++-++++++-+---+---++------ Confidence: 257952774243575976798875875666654645344445724166342533247745 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ---------------------------------+---++--------------------+ Confidence: 958244713555788882422743545743523444135627979977333446767554 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: ++++-------------+---+-------------------------------------- Confidence: 474312378989947354365445874868885425874667448458826763554532 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: -------+----+-+-------------------------+--+-++------------- Confidence: 342622333774343217662757517679899999898343142433335776454674 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: --------------------------++------------------+----+--+-+--- Confidence: 772683265673999372443543225443352953968698541263342473724621 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: --------------++---+---------------------------------------- Confidence: 743545323323324462354422558896898868339442732577866595253747 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: -------------------------------+-++++----------------------- Confidence: 545833785877797734333629654827436353336748677278234131414335 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: ---------------------++++-++-------------------------------- Confidence: 443343665743135275532343623426448824416573799445932448287499 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: ------------------+----------------------------------------- Confidence: 786722424325654877416125837713213414818693828246938886992865 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: ---++++++++-+-+------+----------+-------------------+------- Confidence: 216756555672815352172479586964355213363997996743426454724639 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: -----------------------------------------------------------+ Confidence: 878969987511333578397455712435346128489845594585785657853726 Sequence: SHY Prediction: +++ Confidence: 467 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
RNAbindR	>P38398\|BRCA1 Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: ---------------+---------------------+--+--++-------++++++++ Confidence: 110100302101401710341024212111011312362372465231140166678668 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: ++-++++---+--+-+++--+---------------------+------+--+------- Confidence: 873668534474082657326001100100200101131200512322352354334033 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: ------+++++++-++--+----+-------------+-+--+++++++++++++++-+- Confidence: 214214668999838833523427231311201040262634987777876878977261 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ------------------------------------------------------------ Confidence: 301101211000000111010100000123201111103113210110001000000022 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: ------------------------------------------------------------ Confidence: 012240101034011221210211000000021121014000111120300000100000 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: ------++++--+-++---++--+--+++-++-+++--------+--------------- Confidence: 102013556744527544378236446762892655133101416423123003111313 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: --+-+--+-----+++++-++---+-+--------------------------------- Confidence: 415452352112366687366334526424100110324334313401010000001003 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: -------------------------+-++++--++++++-++++++++++++++++---- Confidence: 331221111111032122121124274679834886888479999999899895862003 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: -------------++++++++++++++++++++++++-++---+-++++-+-+------- Confidence: 000010010233487975799699789899989778635612254578648474224422 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: -+++--+--++++-+-------------+------+--+++-+-++-+++-++-----+- Confidence: 355713523787847232321024044363142116245664546635863781222183 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: +++++++++++++++++++++------++++++++------+++-++---+---++++++ Confidence: 878869999999999989957413122679798764131325564653215244568775 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: +++++-+-----------++-++-----++++-+------+---------+-++------ Confidence: 997983732332412343854564323265762741332061121102027277344021 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: --+++--+------------++--+----------+--+--------------------+ Confidence: 016574462110140121325533620220014345445324300201000000011115 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: -----------++-+++++++-++-------+--------+-++--+---+--++--++- Confidence: 212400014337849887889365411113252103133452572264146415820571 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: +---------+--++------+--+-+++-+++++++++--------+--++++++++++ Confidence: 521101110251157304301512545564667977755222231446245577885777 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: ++--+---++-+--+--++-+-++----------+-+-++--+---+---+-++++++++ Confidence: 674454337646426428737356431412112252845532530062247486678676 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: +---------+------+--++-++-+++-++-+++-----+---+-----------+-+ Confidence: 724300012473224417337629827953861575433215112511321101022705 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: +--++++++++++++-+----+----------------+---+++++-+-+--+++-++- Confidence: 531665577768556274142631240020011002015413868874715327763952 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+-----------+-+-+--++---+-----------------+-----------++ Confidence: 744263141223014373627447532362311110010032424372011301331155 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +-++--+++--------------+----+-+-++-+++++-++++-+++++++++++-++ Confidence: 637514566434100000010315302361647535656647557299969966887358 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: +++++-++----------------------------------+----------------- Confidence: 675863851110000000000001101200111012010203631210111202211020 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ------------------------------------------------------------ Confidence: 123214202000000001001000000001100211112000000000300110000001 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: ------------------------------------------------------------ Confidence: 132000000000000001100000000000000001000000010000000000000000 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: --------------+--------------------------------------------- Confidence: 000310010100125340211220040030000000000120021212100000101001 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: ----------------------++--+---------------------------+----- Confidence: 000000012001000112242257327422301001000001111002001101632343 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: ------+-+-+-++++-+++++++------------------------------------ Confidence: 321112525063556828775576213000000000000020101000010001011010 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: ----------------------------+-----------+------------------- Confidence: 211000001000000011001110200250121442331250120200010101111401 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: --+--------------+------+--++------+------------------------ Confidence: 426431210000130245032323512650311045122310000222122330102310 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: ------------------+--------++++--------------+-------------- Confidence: 041121011021122203521423124666721144120043141540021311203133 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: -+-++++++++++-++--+--+-----------+---------------+--------+- Confidence: 184989989798845824712520313213434531221011004111150021031151 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: ----------------------------------+------------------------+ Confidence: 241040000042203111211200021011411162310021104421000010024047 Sequence: SHY Prediction: -++- Confidence: 2770 * Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. * Confidence: from level 0 (lowest) to level 9 (highest).
Pprint	Sequence: MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ Prediction: ----------------------------------------++----------++++++++ Confidence: 233130100003213100010000100000000000202054112020020144765775 Sequence: CPLCKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYANSYNFAKKENNSPEHLKD Prediction: ++--+----++---+-----+-----------------------+++++++++++-++-- Confidence: 642240210451324323104000000000000001000011235585786796538320 Sequence: EVSIIQSMGYRNRAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYI Prediction: -------++++++-++++++++-+---------------+-++-+++++++-+++++-+- Confidence: 000003357955826965557334110000231100312334304758764234653030 Sequence: ELGSDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKAACEFSETDVTNTEHHQ Prediction: ---------------+----------------+-+----+--+----------++-+-++ Confidence: 100003020001210523110010001101213132223433501000200114424343 Sequence: PSNNDLNTTEKRAAERHPEKYQGSSVSNLHVEPCGTNTHASSLQHENSSLLLTKDRMNVE Prediction: ++++++++--++--+++--+-++++-----------+-+--------------------- Confidence: 454654443347223453252444411312011303524122111001000001221001 Sequence: KAEFCNKSKQPGLARSQHNRWAGSKETCNDRRTPSTEKKVDLNADPLCERKEWNKQKLPC Prediction: ------+-++-++-+-++++++++++++--++-++-+------------+------+-+- Confidence: 221201435436624045365388845413452433323000100020141000024142 Sequence: SENPRDTEDVPWITLNSSIQKVNEWFSRSDELLGSDDSHDGESESNAKVADVLDVLNEVD Prediction: --------------------+-++-+-+-------+-++++++-+--------------- Confidence: 123110000000100112013143331600000034345445334200110000010000 Sequence: EYSGSSEKIDLLASDPHEALICKSERVHSKSVESNIEDKIFGKTYRKKASLPNLSHVTEN Prediction: --+-----------+----------+---+-+--------+-+++++++++-+--+---- Confidence: 004333210000003110000020062314340220003043656655444353040000 Sequence: LIIGAFVTEPQIIQERPLTNKLKRKRRPTSGLHPEDFIKKADLAVQKTPEMINQGTNQTE Prediction: ----------------+++++-+++++++-----------------++------------ Confidence: 000000002000020244456058878452322001000100122363102011120200 Sequence: QNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNMELELNI Prediction: -------++-++---+--+++-++-+--++------------+---++++--+------- Confidence: 001301235174221322343144343144312011100122402045551240032023 Sequence: HNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEIKKKKYNQMPV Prediction: ++++++++++++++++++++-----------+++---------++++++---+++++++- Confidence: 557989898969899847463300000131146503000000054563521246547343 Sequence: RHSRNLQLMEGKEPATGAKKSNKPNEQTSKRHDSDTFPELKLTNAPGSFTKCSNTSELKE Prediction: ++-++------++--++-++++++++++-++-------------------+---+-+-++ Confidence: 442630002203322452675498768523533122010000000000013223534233 Sequence: FVNPSLPREEKEEKLETVKVSNNAEDPKDLMLSGERVLQTERSVESSSISLVPGTDYGTQ Prediction: +-+++-+-------++--++-++-----------+++++--++-------------+--- Confidence: 324440312220013402532442232320002245444135310001000001003001 Sequence: ESISLLEVSTLGKAKTEPNKCVSQCAAFENPKGLIHGCSKDNRNDTEGFKYPLGHEVNHS Prediction: -----------++-++-++++---------------++-+++++---+------+----- Confidence: 100000003224437433654210000002131103351777652333031202311212 Sequence: RETSIEMEESELDAQYLQNTFKVSKRQSFAPFSNPGNAEEECATFSAHSGSLKKQSPKVT Prediction: ---+---------------------+-------+---------------++-+-+----+ Confidence: 210310000000000002110000243120001532230231000223244333431305 Sequence: FECEQKEENQGKNESNIKPVQTVNITAGFPVVGQKDKPVDNAKCSIKGGSRFCLSSQFRG Prediction: -----++++++++++--++---------------------+-+-+++++++++-+++++- Confidence: 120235346776554213412003131100000001101252425677544442546443 Sequence: NETGLITPNKHGLLQNPYRIPPLFPIKSFVKTKCKKNLLEENFEEHSMSPEREMGNENIP Prediction: +-+--------+------+-------+----------+-----------+---------+ Confidence: 424321101214113122412020005220302220030002000223342220021213 Sequence: STVSTISRNNIRENVFKEASSSNINEVGSSTNEVGSSINEIGSSDENIQAELGRNRGPKL Prediction: ---+-----+++++++++++--------------+-+-+-----------++-+++++++ Confidence: 032323133565463444331122211122232233424310200330236436696565 Sequence: NAMLRLGVLQPEVYKQSLPGSNCKHPEIKKQEYEEVVQTVNTDFSPYLISDNLEQPMGSS Prediction: +---+---------------++--+-+-+---------------------------+--- Confidence: 610141200100101001015523324132120111100000000000000100003012 Sequence: HASQVCSETPDDLLDDGEIKEDTSFAENDIKESSAVFSKSVQKGELSRSPSPFTHTHLAQ Prediction: +--------------------+-----------------+---+--+++++++-----++ Confidence: 513301010000000000100321201030000011132421343245445643212257 Sequence: GYRRGAKKLESSEENLSSEDEELPCFQHLLFGKVNNIPSQSTRHSTVATECLSKNTEENL Prediction: ++++++++++++-------------------++-++++++--+-------+---+----- Confidence: 799976774445112000000000000001035036555423421221024302420021 Sequence: LSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSSQCSELEDLTANTNTQDPFLIGS Prediction: ----++--+--------------------------------------------------+ Confidence: 020045124010001001001120002113120010011100010110012000011214 Sequence: SKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEEQSMDSNLGEAASGCESETSVSE Prediction: +++--+------------------------------------------------------ Confidence: 434313331302000000000000000001100000000000011000010000100101 Sequence: DCSGLSSQSDILTTQQRDTMQHNLIKLQQEMAELEAVLEQHGSQPSNSYPSIISDSSALE Prediction: -------------------------------------------++++------------- Confidence: 100102121210001010110100010000000000000120134343301100000000 Sequence: DLRNPEQSTSEKAVLTSQKSSEYPISQNPEGLSADKFEVSADSSTSKNKEPGVERSSPSK Prediction: ------------------++-----------------------+++++--++-+++++++ Confidence: 000000110021012102342113303300220000000003265453324323535555 Sequence: CPSLDDRWYMHSCSGSLQNRNYPSQEELIKVVDVEEQQLEESGPHDLTETSYLPRQDLEG Prediction: ++--+-----++++++-++++++------------------------------------- Confidence: 453031322145657404334451011000010010100001112201000301100000 Sequence: TPYLESGISLFSDDPESDPSEDRAPESARVGNIPSSTSALKVPQLKVAESAQSPAAAHTT Prediction: ------------------+---+---------+++------------------+------ Confidence: 000000000000000311412040321130314452320000000200111323311211 Sequence: DTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLI Prediction: -------------------+++++++-+++-+---------------------------- Confidence: 021132320121000211035445443675343001211000000021132000201000 Sequence: TEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDV Prediction: -------------------------++--------------------------------- Confidence: 000010000200000000000000144010320030010033220320000000000013 Sequence: VNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL Prediction: -++++++++++++++++-++-+-------------------------------------- Confidence: 288999999999944743543520000010120001000011001010000000000000 Sequence: GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPH Prediction: ++------------------+--------------------------------------+ Confidence: 350100000000000000004010000000000100000000000102000000001014 Sequence: SHY Prediction: --- Confidence: 123 *Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *Confidence: from level 0 (lowest) to level 9 (highest).

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