| Detail-Interactions: | |
| RAID ID: | RPI00000003 |
|---|---|
| RNA/Protein Symbol 1: | RN7SL1(7SL RNA) |
| RNA/Protein Category 1: | lncRNA |
| RNA/Protein Symbol 2: | APOBEC3G(A3G) |
| RNA/Protein Category 2: | Protein |
| Validated Method: | Immunoprecipitation, qRT-PCR |
| Tissue: | 293 cells, 293/A3G-HA cells, 293T cells |
| PMID: | 17881443 |
| Detail description: | We demonstrate here that A3G selectively interacts with certain polymerase III (Pol III)-derived RNAs, including Y3 and 7SL RNAs. |
| The Predicated Binding Sites between RN7SL1 and APOBEC3G | |||||
| By miRanda | Structure | Match Score | Energy Score | RN7SL1 Location | APOBEC3G Location |
| The Predicated Binding Sites between RN7SL1 and APOBEC3G | ||||
| By RIsearch | Structure | RN7SL1 Location | APOBEC3G Location | Score |
| The Predicated Binding Sites of APOBEC3G | |
| RBPBD | |
| RsiteDB | |
| BindN |
>sp|Q9HC16|ABC3G_HUMAN DNA dC->dU-editing enzyme APOBEC-3G OS=Homo sapiens GN=APOBEC3G PE=1 SV=1 Sequence: MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS Prediction: -----+------+---+++++++---------+-++--+------+---++--++--+-- Confidence: 894794796388554565577564478584347555725723383582856246822524 Sequence: ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV Prediction: +---+---------+++++++-+------------------------------------- Confidence: 656276672234226689878263692978999899989949666677274344757226 Sequence: ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK Prediction: --+--+--------------------------------------+--------------- Confidence: 754835987996628663453688997928823722622443446228278789589732 Sequence: YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG Prediction: -++++-+--------------+++++++-+--+----------------++--------- Confidence: 675682573888897945622476778827334457539627899646655373685975 Sequence: FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS Prediction: -----------------------------++++++-+---------+------------- Confidence: 783374826989899976986668772545568762732927667662333333333333 Sequence: KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP Prediction: ------------------------------------------------------------ Confidence: 333333333333333333333333333333333333333333333333333333333333 Sequence: WDGLDEHSQDLSGRLRAILQNQEN Prediction: ------------------------ Confidence: 333333333333333333333333 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| BindN+ |
>sp|Q9HC16|ABC3G_HUMAN DNA dC->dU-editing enzyme APOBEC-3G OS=Homo sapiens GN=APOBEC3G PE=1 SV=1 Sequence: MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS Prediction: ++++-++--++------------------+-----------++-++-----+--+-+--- Confidence: 463637514363337555526226224124145176557425326542448365434313 Sequence: ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV Prediction: ------------------------------+---------------------+-+----- Confidence: 431435474694282551344455631823362124222462796877545377464727 Sequence: ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK Prediction: -+-----------------------+---+------------------------------ Confidence: 656446475411227244621223255144435746334544453455756345235545 Sequence: YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG Prediction: -------------+----------+-----+---++-++------+-+---------++- Confidence: 438696859425832343333434472174421234445652483416122321431642 Sequence: FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS Prediction: +-+++--------------------------------+---------------------- Confidence: 323534355366734238269797695865467436637242531232325748956351 Sequence: KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP Prediction: ---+--------+----------------+------------------------------ Confidence: 121571857377473775435232624573547282433735454555454644532336 Sequence: WDGLDEHSQDLSGRLRAILQNQEN Prediction: -------------+------+--+ Confidence: 258656432453358245833115 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| RNAbindR |
>Q9HC16|APOBEC3G Sequence: MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS Prediction: -+++-++------------+-++--++++++++++-++-+++++-++----+----+--- Confidence: 257825722331222023454574477788957874672777772561234511426124 Sequence: ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV Prediction: -+++-------------------------++-+++++++------+----+++-+++++- Confidence: 356523201002200003112411121035848999858402210613438883979764 Sequence: ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK Prediction: ++--+-+-++++---++-+----+-+-+-+--+----------------+---------- Confidence: 794474545576434662543446482647326442111011230032153233434231 Sequence: YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG Prediction: ------------------------+-++-++++++++++++++-+++++--+---+---- Confidence: 312011040001100001211333625645565889889665517657623611363242 Sequence: FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS Prediction: --------------+++++-+-------------------++-+++++++---------- Confidence: 201121341442346555615112113023124431220358479898674113003134 Sequence: KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP Prediction: -+++-++++++++-+------++-+-+-+--+---+--+-+--------+--+--+-++- Confidence: 388829796666945434233662546454261445337353212131252254254554 Sequence: WDGLDEHSQDLSGRLRAILQNQEN Prediction: ------+------+------+--+- Confidence: 3442226223321711220464360 *** Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. *** Confidence: from level 0 (lowest) to level 9 (highest). |
| Pprint |
Sequence: MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS Prediction: --++-+++--+------------------+++++-----++-+++++--------++-++ Confidence: 135615430140000010000300210009444313310561664532230000335345 Sequence: ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV Prediction: ++-------+-+-----+---+-+--+------+-+--+------------+--+----- Confidence: 952100000404000223112538004000010424303001000000030320400000 Sequence: ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK Prediction: -+-----------+-++++++++-++-+-+------------------------------ Confidence: 031110001100233343454473463415001000000000000020000000000000 Sequence: YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG Prediction: --------------+-----------+-------+++++--+--------------+++- Confidence: 000000010020136200000021004312102297565303103302222232225443 Sequence: FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS Prediction: +++++------++-------------------+-+--+------+--------------- Confidence: 543342331323312321000000000211334260150000113211020000001023 Sequence: KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP Prediction: +-++-+------+--------+--++--+------------------------------- Confidence: 635426000000402000102431343152032203000000000001000002000020 Sequence: WDGLDEHSQDLSGRLRAILQNQEN Prediction: +------------+-----+++-+ Confidence: 400000000000130222047524 ***Prediction: binding residues are labeled with '+' and in red; non-binding residues labeled with '-' and in green. ***Confidence: from level 0 (lowest) to level 9 (highest). |
The 'First Node' or 'Second Node' option represents the sub-network of interacting RNA/Protein with the first or second interaction node,
the 'Both the Nodes' option represents the sub-network of interacting RNA/Protein with both of interaction nodes.
The 'First Neighbour' represents the sub-network of direct interacting with the center node,
the 'Second Neighbour' represents the sub-network of direct or second step interacting with the center node.
Interaction sub-network based on the two nodes of this interaction may help the researchers represents all interacting partners immediately.
The Detail page: representing the detail information for RNA-RNA/RNA-Protein interaction;
The Binding page: representing the predicted binding sites and/or constants.
The Network page: representing the interaction sub-network of interacting RNA/Protein.