ncRNADetailInformation

Detail Information
Functional analysis

miRNA name

pre-miRNA

family

pre-miRNA Sequence

mature-miRNA

mature sequence

pre-miRNA description

miR-429

MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
MI0001641	MIPF0000019	CGCCGGCCGAUGGGCGUCUUACCAGACAUGGUUAGACCUGGCCCUCUGUCUAAUACUGUCUGGUAAAACCGUCCAUCCGCUGC	MIMAT0001536 hsa-miR-429	UAAUACUGUCUGGUAAAACCGU

link to database

TargetScanS 6.2 | MicroCosm | microRNA.org | miRNAMap 2.0

Interacted genes from RAID,miRTarBase

EP300,TCF7L1,KLF11,MYC,OSTF1,KLHL20,WDR37,RASSF2,PTPRD,ZEB2,BCL2,ERBB2IP,RIN2,RERE,SOX2
more » EP300,TCF7L1,KLF11,MYC,OSTF1,KLHL20,WDR37,RASSF2,PTPRD,ZEB2,BCL2,ERBB2IP,RIN2,RERE,SOX2,HOXB5,ZEB1,XIAP,VAC14,ELMO2,BAP1,SHC1,WASF3,SEPT7

KEGG pathways enriched for interacted genes

pathway name

pathway description

target genes enrich in pathway

p-value

hsa05200	Pathways in cancer	BCL2,TCF7L1,EP300,XIAP,MYC,	5.09E-4
hsa04520	Adherens junction	TCF7L1,EP300,WASF3,	4.52E-2
hsa05210	Colorectal cancer	BCL2,TCF7L1,MYC,	5.36E-2
hsa05222	Small cell lung cancer	BCL2,XIAP,MYC,	5.36E-2
hsa05215	Prostate cancer	BCL2,TCF7L1,EP300,	6.00E-2

Gene ontology terms enriched for interacted genes

GO terms

GO terms description

target genes enrich in GO term

p-value

GO:0010629	negative regulation of gene expression	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,MYC,	1.16E-4
GO:0048568	embryonic organ development	SOX2,HOXB5,ZFPM2,ZEB1,MYC,	1.54E-4
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	SOX2,TCF7L1,EP300,ZFPM2,ZEB1,MYC,	2.70E-4
GO:0010604	positive regulation of macromolecule metabolic process	SOX2,BCL2,TCF7L1,EP300,SHC1,ZFPM2,ZEB1,MYC,	2.93E-4
GO:0045935	positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	SOX2,TCF7L1,EP300,SHC1,ZFPM2,ZEB1,MYC,	3.72E-4

GO:0051173	positive regulation of nitrogen compound metabolic process	SOX2,TCF7L1,EP300,SHC1,ZFPM2,ZEB1,MYC,	4.40E-4
GO:0010557	positive regulation of macromolecule biosynthetic process	SOX2,TCF7L1,EP300,SHC1,ZFPM2,ZEB1,MYC,	4.78E-4
GO:0031328	positive regulation of cellular biosynthetic process	SOX2,TCF7L1,EP300,SHC1,ZFPM2,ZEB1,MYC,	6.12E-4
GO:0009891	positive regulation of biosynthetic process	SOX2,TCF7L1,EP300,SHC1,ZFPM2,ZEB1,MYC,	6.61E-4
GO:0016481	negative regulation of transcription	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,	7.17E-4
GO:0007389	pattern specification process	TCF7L1,HOXB5,EP300,ZEB2,ZEB1,	8.19E-4
GO:0006357	regulation of transcription from RNA polymerase II promoter	SOX2,KLF11,TCF7L1,EP300,ZFPM2,ZEB1,MYC,	8.38E-4
GO:0045893	positive regulation of transcription, DNA-dependent	SOX2,TCF7L1,EP300,ZFPM2,ZEB1,MYC,	8.54E-4
GO:0010605	negative regulation of macromolecule metabolic process	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,MYC,	8.81E-4
GO:0051254	positive regulation of RNA metabolic process	SOX2,TCF7L1,EP300,ZFPM2,ZEB1,MYC,	8.87E-4
GO:0006355	regulation of transcription, DNA-dependent	SOX2,KLF11,TCF7L1,HOXB5,EP300,RERE,ZFPM2,ZEB2,ZEB1,MYC,	1.11E-2
GO:0045934	negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,	1.17E-2
GO:0048562	embryonic organ morphogenesis	SOX2,HOXB5,ZEB1,MYC,	1.24E-2
GO:0051172	negative regulation of nitrogen compound metabolic process	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,	1.24E-2
GO:0042127	regulation of cell proliferation	SOX2,BCL2,BAP1,KLF11,SHC1,ZEB1,MYC,	1.26E-2
GO:0051252	regulation of RNA metabolic process	SOX2,KLF11,TCF7L1,HOXB5,EP300,RERE,ZFPM2,ZEB2,ZEB1,MYC,	1.31E-2
GO:0048598	embryonic morphogenesis	SOX2,HOXB5,ZEB2,ZEB1,MYC,	1.37E-2
GO:0009952	anterior/posterior pattern formation	TCF7L1,HOXB5,EP300,ZEB2,	1.44E-2
GO:0010558	negative regulation of macromolecule biosynthetic process	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,	1.57E-2
GO:0001501	skeletal system development	BCL2,OSTF1,HOXB5,ZEB1,MYC,	1.58E-2
GO:0031327	negative regulation of cellular biosynthetic process	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,	1.76E-2
GO:0045941	positive regulation of transcription	SOX2,TCF7L1,EP300,ZFPM2,ZEB1,MYC,	1.80E-2
GO:0043009	chordate embryonic development	HOXB5,EP300,ZFPM2,ZEB2,ZEB1,	1.81E-2
GO:0009792	embryonic development ending in birth or egg hatching	HOXB5,EP300,ZFPM2,ZEB2,ZEB1,	1.87E-2
GO:0009890	negative regulation of biosynthetic process	SOX2,KLF11,TCF7L1,ZFPM2,ZEB2,ZEB1,	1.93E-2
GO:0010628	positive regulation of gene expression	SOX2,TCF7L1,EP300,ZFPM2,ZEB1,MYC,	2.05E-2
GO:0045892	negative regulation of transcription, DNA-dependent	SOX2,KLF11,TCF7L1,ZFPM2,ZEB1,	2.36E-2
GO:0006915	apoptosis	BCL2,ELMO2,KLF11,EP300,XIAP,MYC,	2.40E-2
GO:0030111	regulation of Wnt receptor signaling pathway	SOX2,TCF7L1,ZEB2,	2.50E-2
GO:0051253	negative regulation of RNA metabolic process	SOX2,KLF11,TCF7L1,ZFPM2,ZEB1,	2.51E-2
GO:0012501	programmed cell death	BCL2,ELMO2,KLF11,EP300,XIAP,MYC,	2.56E-2
GO:0035282	segmentation	TCF7L1,EP300,ZEB2,	2.72E-2
GO:0006350	transcription	SOX2,KLF11,TCF7L1,HOXB5,EP300,RERE,ZFPM2,ZEB2,ZEB1,MYC,	3.74E-2
GO:0003002	regionalization	TCF7L1,HOXB5,EP300,ZEB2,	3.81E-2
GO:0008219	cell death	BCL2,ELMO2,KLF11,EP300,XIAP,MYC,	5.17E-2
GO:0035295	tube development	BCL2,EP300,ZFPM2,ZEB2,	5.20E-2
GO:0016265	death	BCL2,ELMO2,KLF11,EP300,XIAP,MYC,	5.32E-2
GO:0007423	sensory organ development	SOX2,BCL2,ZEB1,MYC,	5.81E-2
GO:0007049	cell cycle	SEPT7,BCL2,ERBB2IP,EP300,MYC,RASSF2,	7.13E-2
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	SOX2,KLF11,ZFPM2,ZEB1,	8.77E-2

KEGG pathways and Gene Ontology terms enriched for the interacted genes of ncRNA from RAID and miRTarBase.

disease name	related genes	p-value