ncRNADetailInformation

Detail Information
Functional analysis

miRNA name

pre-miRNA

family

pre-miRNA Sequence

mature-miRNA

mature sequence

pre-miRNA description

miR-29b

MI0000712	MIPF0000009	CUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAG	MIMAT0000127 mmu-miR-29b-3p	UAGCACCAUUUGAAAUCAGUGUU
MI0000143	MIPF0000009	AGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCACCAUUUGAAAUCAGUGUUCU	MIMAT0004523 mmu-miR-29b-1-5p	GCUGGUUUCAUAUGGUGGUUUA
MI0000712	MIPF0000009	CUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAG	MIMAT0017063 mmu-miR-29b-2-5p	CUGGUUUCACAUGGUGGCUUAGAUU
MI0000712	MIPF0000009	CUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAG	MIMAT0000127 mmu-miR-29b-3p	UAGCACCAUUUGAAAUCAGUGUU
MI0000143	MIPF0000009	AGGAAGCUGGUUUCAUAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCACCAUUUGAAAUCAGUGUUCU	MIMAT0004523 mmu-miR-29b-1-5p	GCUGGUUUCAUAUGGUGGUUUA
MI0000712	MIPF0000009	CUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAG	MIMAT0017063 mmu-miR-29b-2-5p	CUGGUUUCACAUGGUGGCUUAGAUU
MI0000712	MIPF0000009	CUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAG	MIMAT0000127 mmu-miR-29b-3p	UAGCACCAUUUGAAAUCAGUGUU
MI0000712	MIPF0000009	CUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAG	MIMAT0000127 mmu-miR-29b-3p	UAGCACCAUUUGAAAUCAGUGUU

link to database

TargetScanS 6.2 | MicroCosm | microRNA.org | miRNAMap 2.0

Interacted genes from RAID,miRTarBase

Dusp2,Col5a3,Fbn1,Tgfb3,Col4a2,Col3a1,Arg1,Bcl2l11,Eln,Bmf,Col2a1,Hdac4,Cav2,Col1a1,Mcl1
more » Dusp2,Col5a3,Fbn1,Tgfb3,Col4a2,Col3a1,Arg1,Bcl2l11,Eln,Bmf,Col2a1,Hdac4,Cav2,Col1a1,Mcl1,Bak1,Ctnnbip1,Insig1,Hrk,Bbc3,Col1a2,Dnmt3b,Acvr2a

KEGG pathways enriched for interacted genes

pathway name

pathway description

target genes enrich in pathway

p-value

mmu04512	ECM-receptor interaction	Col1a2,Col1a1,Col5a3,Col3a1,Col2a1,Col4a2,	1.01E-6
mmu04510	Focal adhesion	Col1a2,Col1a1,Col5a3,Col3a1,Cav2,Col2a1,Col4a2,	3.73E-6
mmu00270	Cysteine and methionine metabolism	Dnmt3b,Dnmt3a,	7.76E-1

Gene ontology terms enriched for interacted genes

GO terms

GO terms description

target genes enrich in GO term

p-value

GO:0042981	regulation of apoptosis	Bcl2l11,Hrk,Bak1,Mcl1,Tgfb3,Bmf,Col2a1,Bbc3,	1.78E-5
GO:0043067	regulation of programmed cell death	Bcl2l11,Hrk,Bak1,Mcl1,Tgfb3,Bmf,Col2a1,Bbc3,	1.93E-5
GO:0010941	regulation of cell death	Bcl2l11,Hrk,Bak1,Mcl1,Tgfb3,Bmf,Col2a1,Bbc3,	1.99E-5
GO:0001501	skeletal system development	Col1a1,Insig1,Tgfb3,Acvr2a,Col2a1,Hdac4,	7.70E-5
GO:0030198	extracellular matrix organization	Col5a3,Col3a1,Eln,Col2a1,	5.53E-4

GO:0006915	apoptosis	Bcl2l11,Hrk,Bak1,Mcl1,Bmf,Bbc3,	7.46E-4
GO:0060349	bone morphogenesis	Col1a1,Insig1,Col2a1,	7.94E-4
GO:0012501	programmed cell death	Bcl2l11,Hrk,Bak1,Mcl1,Bmf,Bbc3,	8.06E-4
GO:0060348	bone development	Col1a1,Insig1,Col2a1,Hdac4,	8.71E-4
GO:0008219	cell death	Bcl2l11,Hrk,Bak1,Mcl1,Bmf,Bbc3,	1.10E-2
GO:0048705	skeletal system morphogenesis	Col1a1,Insig1,Tgfb3,Col2a1,	1.15E-2
GO:0016265	death	Bcl2l11,Hrk,Bak1,Mcl1,Bmf,Bbc3,	1.22E-2
GO:0060021	palate development	Insig1,Tgfb3,Col2a1,	1.44E-2
GO:0043062	extracellular structure organization	Col5a3,Col3a1,Eln,Col2a1,	1.70E-2
GO:0031399	regulation of protein modification process	Bak1,Tgfb3,Acvr2a,Hdac4,	2.28E-2
GO:0031327	negative regulation of cellular biosynthetic process	Insig1,Ctnnbip1,Dnmt3b,Dnmt3a,Hdac4,	4.59E-2
GO:0009890	negative regulation of biosynthetic process	Insig1,Ctnnbip1,Dnmt3b,Dnmt3a,Hdac4,	4.75E-2
GO:0043045	DNA methylation during embryonic development	Dnmt3b,Dnmt3a,	4.84E-2
GO:0031401	positive regulation of protein modification process	Tgfb3,Acvr2a,Hdac4,	6.97E-2
GO:0043065	positive regulation of apoptosis	Bcl2l11,Bak1,Tgfb3,Bbc3,	7.15E-2
GO:0043068	positive regulation of programmed cell death	Bcl2l11,Bak1,Tgfb3,Bbc3,	7.31E-2
GO:0010942	positive regulation of cell death	Bcl2l11,Bak1,Tgfb3,Bbc3,	7.47E-2
GO:0007423	sensory organ development	Bcl2l11,Insig1,Bak1,Col2a1,	7.89E-2
GO:0006346	methylation-dependent chromatin silencing	Dnmt3b,Dnmt3a,	8.07E-2
GO:0010605	negative regulation of macromolecule metabolic process	Bak1,Ctnnbip1,Dnmt3b,Dnmt3a,Hdac4,	8.15E-2
GO:0060351	cartilage development involved in endochondral bone morphogenesis	Col1a1,Col2a1,	9.67E-2
GO:0001783	B cell apoptosis	Bcl2l11,Bak1,	9.67E-2
GO:0032268	regulation of cellular protein metabolic process	Bak1,Tgfb3,Acvr2a,Hdac4,	9.97E-2

KEGG pathways and Gene Ontology terms enriched for the interacted genes of ncRNA from RAID and miRTarBase.

disease name	related genes	p-value