错误信息提示:
错误号:12142

错误原因:Table 'hscellor_ncrdeathdb.ncrnadeathmiRNA2targetDB' doesn't exist

错误sql语句:
select * from ncrnadeathmiRNA2targetDB where mirnaSymbol like '%miR-196b' and taxid like '9606'
——错误记录被保存!

ncRNADetailInformation
  • Detail Information
  • Functional analysis
miRNA namepre-miRNA familypre-miRNA Sequencemature-miRNAmature sequencepre-miRNA description
miR-196b
MI0001150 MIPF0000031 ACUGGUCGGUGAUUUAGGUAGUUUCCUGUUGUUGGGAUCCACCUUUCUCUCGACAGCACGACACUGCCUUCAUUACUUCAGUUG MIMAT0001080

hsa-miR-196b-5p
UAGGUAGUUUCCUGUUGUUGGG miR-196b is predicted based on sequence homology to miR-196a . Yektaet al. report that miR-196 miRNAs are expressed from HOX gene clusters inmammals, and that HOX genes in these clusters are targets of miR-196.Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directedcleavage through a perfectly complementary miR-target site. Other HOXgenes have imperfect miR-196 complementary sites indicative of regulationby translational repression . The mature sequence shown hererepresents the most commonly cloned form from large-scale cloning studies.
MI0001150 MIPF0000031 ACUGGUCGGUGAUUUAGGUAGUUUCCUGUUGUUGGGAUCCACCUUUCUCUCGACAGCACGACACUGCCUUCAUUACUUCAGUUG MIMAT0001080

hsa-miR-196b-5p
UAGGUAGUUUCCUGUUGUUGGG miR-196b is predicted based on sequence homology to miR-196a . Yektaet al. report that miR-196 miRNAs are expressed from HOX gene clusters inmammals, and that HOX genes in these clusters are targets of miR-196.Indeed, HOXB8 mRNA was shown to be a natural target for miR-196-directedcleavage through a perfectly complementary miR-target site. Other HOXgenes have imperfect miR-196 complementary sites indicative of regulationby translational repression . The mature sequence shown hererepresents the most commonly cloned form from large-scale cloning studies.
link to database TargetScanS 6.2 | MicroCosm | microRNA.org | miRNAMap 2.0
Interacted genes from RAID,miRTarBase
MLL2,MAT2A,TUBB,HOXB8,ATF4,CDK5R1,KIAA1274,MYC,TRA2A,IARS,MRPS35,MFHAS1,LAMB2,COX3,BUB1
more » MLL2,MAT2A,TUBB,HOXB8,ATF4,CDK5R1,KIAA1274,MYC,TRA2A,IARS,MRPS35,MFHAS1,LAMB2,COX3,BUB1,RRP1B,MAPRE1,MEPCE,SLC6A15,BCL2,WHSC1L1,MRPS26,PDE12,SNX9,TXNDC5,LHX2,HOXC8,CACNB3,ERG,ATP6,CHD2,MSH6,SLC23A2,GPS1,HTR1D,CD8A,BEST3,ALDOA,HERC2,CKB,PRKACA,HOXA10,GNB2L1,TXLNA,AJUBA,HSD17B10,GCFC1,TLE3,RTF1,ND5,REEP5
KEGG pathways enriched for interacted genes
pathway namepathway descriptiontarget genes enrich in pathwayp-value
hsa05210 Colorectal cancer BCL2,MSH6,MYC, 4.62E-1
hsa05222 Small cell lung cancer BCL2,LAMB2,MYC, 4.62E-1
hsa04010 MAPK signaling pathway CACNB3,ATF4,PRKACA,MYC, 9.47E-1
Gene ontology terms enriched for interacted genes
GO termsGO terms descriptiontarget genes enrich in GO termp-value
GO:0008283 cell proliferation CDK5R1,BCL2,BUB1,TXLNA,MAPRE1,ERG,MYC, 2.70E-2
GO:0002252 immune effector process BCL2,TUBB,MSH6,CD8A, 9.35E-2
GO:0033554 cellular response to stress GPS1,BCL2,LAMB2,ATF4,MSH6,MRPS26,MRPS35, 9.53E-2
KEGG pathways and Gene Ontology terms enriched for the interacted genes of ncRNA from RAID and miRTarBase.
disease namerelated genesp-value