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API
We provide data for non-commercial use, distribution, or reproduction in any medium, only if you properly cite the original work. If you are a commercial user, please contact us firstly.
URL Form
http://www.rna-society.org/pdr/php/API.php?searchtype=**&species=**&diseasename=**[&fuzzy=**]
http://www.rna-society.org/pdr/php/API.php?searchtype=genome&species=**&diseasename=**&variation=**&location=**
http://www.rna-society.org/pdr/php/API.php?searchtype=epigenome&species=**&diseasename=**&epigenome=**
http://www.rna-society.org/pdr/php/API.php?searchtype=transcriptome&species=**&diseasename=**&RNAcategory=**
http://www.rna-society.org/pdr/php/API.php?searchtype=proteome&species=**&diseasename=**
- searchtype =
The omics type that the user wants to search
- species =
Species that the user wants to search
- diseasename =
Disease name that the user wants to search
- variation =
Type of variation that the user wants to search
- location =
Chromosome location the user wants to search
- epigenome =
DNA Methylation or Histone Modification that the user wants to search
- RNAcategory =
RNA category that the user wants to search
Specification of Tag Values
- For "searchtype" tag:
| Valid Value | Note |
|---|---|
| * | Don't limit searchtype |
| epigenome | Search for epigenomics |
| genome | Search for genomics |
| proteome | Search for proteomics |
| transcriptome | Search for transcriptomics |
- For "species" tag:
| Valid Value | Note |
|---|---|
| * | Don't limit species |
| Danio rerio | Species limit to 'Danio rerio' |
| Drosophila melanogaster | Species limit to 'Drosophila melanogaster' |
| Homo sapiens | Species limit to 'Homo sapiens' |
| Mus musculus | Species limit to 'Mus musculus' |
| Rattus norvegicus | Species limit to 'Rattus norvegicus' |
- For "variation" tag:
| Valid Value | Note |
|---|---|
| * | Don't limit variation |
| CNV | Variation limit to 'CNV' |
| Indel | Variation limit to 'Indel' |
| SNP | Variation limit to 'SNP' |
| SNV | Variation limit to 'SNV' |
| VNTR | Variation limit to 'VNTR' |
- For "location" tag:
| Valid Value | Note |
|---|---|
| * | Don't limit location |
| 1,1000000,2000000 | The range of location is the chromosome 1 from 1000000 to 2000000 |
| x,1040608,2040608 | The range of location is the chromosome x from 1040608 to 2040608 |
| chr,start,end | The range of location is the chromosome "chr" from "start" to "end" |
- For "epigenome" tag:
| Valid Value | Note |
|---|---|
| * | Don't limit epigenome |
| DNA methylation | Epigenome limit to 'DNA methylation' |
| Histone modification | Epigenome limit to 'Histone modification' |
- For "RNAcategory" tag:
| Valid Value | Note |
|---|---|
| * | Don't limit RNA category |
| lncRNA | RNA category limit to 'lncRNA' |
| miRNA | RNA category limit to 'miRNA' |
| mRNA | RNA category limit to 'mRNA' |
| snoRNA | RNA category limit to 'snoRNA' |
Note
- PDR supports fuzzy queries, users are able to obtain more results by streamlining input. For example, you can get all informations contained 'autism' in human with Autism Spectrum Disorder from genomics by the following way:
http://www.rna-society.org/pdr/php/API.php?searchtype=genome&species=Homo sapiens&diseasename=autism&fuzzy=true
Example
- Searching for details which include SNP as keyword from genomics:
- http://www.rna-society.org/pdr/php/API.php?searchtype=genome&species=&diseasename=&variation=SNP&fuzzy=false
- Searching for details which include SNP as keyword with location between 1000000 and 2000000 within chromosome 1 from genomics:
- http://http://www.rna-society.org/pdr/php/API.php?searchtype=genome&species=&diseasename=&variation=SNP&location=1,1000000,2000000&fuzzy=false
- Searching for details which include Autism Spectrum Disorder as keyword from four omics:
- http://www.rna-society.org/pdr/php/API.php?searchtype=&species=&diseasename=Autism Spectrum Disorder&fuzzy=false